Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0372 ATGAAGAGGTTCTCTGCCTGCTGCTTCACTAGCAGAATCTCCAAGTTTCACTCCCACTGGAAGCACAACCAATCTCAGTCTCAGATCATGGCAGGAAACATCTCTGGTCCGAGTGGGAGCAAGGCTgctaatattttacttaatcaTGACTTCTCTAGTGGGCTGAACTATTGGCATCTCAATTGTTGTACTGGCTATGTAATTTCGGCCGAAACAGGTGTTAATTATGCTGTTATCACCAACCGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGACAGAATTGCCATTGGTTCAACTTACACGGTTTCGGCTTGTGTGGGAGTATCCGGGCTTTCTCAGGGATCCAGTGATGTTCTAGCTACTCTGAAACTAGAATATCGTGATTCAGCTACTAGTTACTTGTTCATTGGAagAACTTCTGTTAATAAGGATAGCTGGGAAAAGTTGGAAGGGACATTCTCATTGTCAACTATGCCTAATCGGGCTGTATTTTATTTGGAAGGGCCTGCTCCTGGAGTTGACCTGCTTATACGATCAGTAGAGATAAACTGTTCCACTCCAAATAATAATaccACAAGCACAGGATGTGTTTCAACTGGAGATGACAACATCATAATTAACCCACAATTTGATGATGGCCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTATCTTGCATGATTCCATGAATGATGGGAAAATTGTTCCAAAGTCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATTCAGCAGGAGATCACTGGACGTGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTAGAATATTTGGAAACAATGTCTCTACTGCTGATGTACGGGCTACTTTGTGGGTCCAAACACCAGATCTTCGAGAGCAATATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGGTTACAATGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCCAAAGTGGTCCTTTATTTGGAGGGACCCCCTCCAGGCACTGACATTCTTCTCAATACTTTGATCTTAAAGCATGCAGCTAAAACACCTCCTTCAACCCCTCCGGATGTAAAGAATGTTGCTTTTGGGGTTAATATAATTGAGAACAGCAATCTGGCTGATGGCACCAATGGATGGTTTCCCCTCGGCAATTGCACTTTAAGTGTTAAAACTGGTTCACCACATATAATTCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGAACTCCTAAGCGGGCATTACATCCTTGTAACTAATCGAACGCAAACATGGATGGGACCTGCTCAGATCATCACTGATAAAGTGAAACTCTTTATGACTTATCAAGTGTCTGCTTGGGTCCGTATTGGCTCAGGATCAGCAGGGCCACAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTTCTGATGACATGTGGCATGAAATTGGTGGGTCTTTTAGGATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGCGTGGACTTAATGGTTGCTGGACTTCAAATTTTCCCCGTCGATAGACATGCAAGATTTAGATATTTAAAGATCCAAACAGATAAGATCCGTAAAGGTGATGTTATCCTGAAATTCTCTGGGCTGGACTCTGGCAGCTACGCTAACACCTCGGTGCAAGTTAGACAAACACAGAATGATTTCCCTATTGGATCATGTATCAGTAGAACAAACATTGACAATGAGGACTTTGTTAACTTCATTGTGAAGCATTTTAACTGGGCTGTGTTTGGAAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTCAATTACAAGGATGCTGATGATCTGTTAAGCTTGTGTCAGAAGCACAAGATACAAACTCGTGGTCATTGTATCTTCTGGGAAGTGGATGGAACTGTTCAGCAATGGGTCAAATCACTGAACAAAAATGATTTGATGGCAGCTGTCCAAAACCGCTTAAACGGCCTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTTTACCGAGATAGGCTAGGCAAGGATATAAGGGCAAACATGTTCAAAACTGCAAACCAACTAGACCCATCTGCTACACTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACCAGATCATGTCCAGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCGCCAGTTGGGGGAATTGGCATTCAAGGCCACATAGATAGTCCGCTAGGGCCTATTGTTTGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTACCTATATGGTTTACTGAGCTTGATGTGTCTTCCATCAATGAATATGTTAGAGCAGATGATCTAGAAGTTATGCTTCGCGAAGCTATGGCTCATCCTGCAGTAGAAGGCATAATGCTGTGGGGATTTTGGGAGTTGTTTATGAGCAGGGACAATTCACACTTGGTGAATGCAGAAGGTGACATCAATGAGGCTGGGAAAAGGTTCCTAGCTCTAAAACAAGAGTGGCTCTCTCATAGCCGTGGCCATGTTGATGAGCAAGGCCAATACAACTTCAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACCCCATCAAAGAAAATTTCCAAGACATTTGTGCTTGACAAAGGTGACTCGCCACTTGTGGTATCCATCGATTTATAA 2763 0.4296 MKRFSACCFTSRISKFHSHWKHNQSQSQIMAGNISGPSGSKAANILLNHDFSSGLNYWHLNCCTGYVISAETGVNYAVITNRKECWQGLEQDITDRIAIGSTYTVSACVGVSGLSQGSSDVLATLKLEYRDSATSYLFIGRTSVNKDSWEKLEGTFSLSTMPNRAVFYLEGPAPGVDLLIRSVEINCSTPNNNTTSTGCVSTGDDNIIINPQFDDGLNNWSGRGCKIILHDSMNDGKIVPKSGKFFASATERTQNWNGIQQEITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQTPDLREQYIGIANVQATDKDWVTMQGKFLLNGSPSKVVLYLEGPPPGTDILLNTLILKHAAKTPPSTPPDVKNVAFGVNIIENSNLADGTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGHYILVTNRTQTWMGPAQIITDKVKLFMTYQVSAWVRIGSGSAGPQNVNVALGVDNQWVNGGQTEVSDDMWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHARFRYLKIQTDKIRKGDVILKFSGLDSGSYANTSVQVRQTQNDFPIGSCISRTNIDNEDFVNFIVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLSLCQKHKIQTRGHCIFWEVDGTVQQWVKSLNKNDLMAAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYRDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPLGPIVCSSLDKLGILGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPSKKISKTFVLDKGDSPLVVSIDL 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0372 920 SMART glyco_10 614 864 IPR001000 GO:0004553|GO:0005975
Ssu5g0372 920 Pfam Carbohydrate binding domain 377 520 IPR003305 GO:0016798
Ssu5g0372 920 Pfam Carbohydrate binding domain 205 342 IPR003305 GO:0016798
Ssu5g0372 920 Pfam Carbohydrate binding domain 43 174 IPR003305 GO:0016798
Ssu5g0372 920 PANTHER - 195 920 - -
Ssu5g0372 920 PANTHER - 39 184 - -
Ssu5g0372 920 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 568 863 IPR001000 GO:0004553|GO:0005975
Ssu5g0372 920 SUPERFAMILY Galactose-binding domain-like 43 187 IPR008979 -
Ssu5g0372 920 SUPERFAMILY Galactose-binding domain-like 375 535 IPR008979 -
Ssu5g0372 920 Gene3D Glycosidases 566 875 - -
Ssu5g0372 920 SUPERFAMILY (Trans)glycosidases 568 871 IPR017853 -
Ssu5g0372 920 Pfam Glycosyl hydrolase family 10 577 834 IPR001000 GO:0004553|GO:0005975
Ssu5g0372 920 PRINTS Glycosyl hydrolase family 10 signature 645 657 IPR001000 GO:0004553|GO:0005975
Ssu5g0372 920 PRINTS Glycosyl hydrolase family 10 signature 759 771 IPR001000 GO:0004553|GO:0005975
Ssu5g0372 920 PRINTS Glycosyl hydrolase family 10 signature 727 738 IPR001000 GO:0004553|GO:0005975
Ssu5g0372 920 PANTHER GLYCOSYL HYDROLASE 195 920 IPR044846 GO:0004553|GO:0005975
Ssu5g0372 920 SUPERFAMILY Galactose-binding domain-like 204 358 IPR008979 -
Ssu5g0372 920 PANTHER GLYCOSYL HYDROLASE 39 184 IPR044846 GO:0004553|GO:0005975
Ssu5g0372 920 Gene3D - 200 357 - -
Ssu5g0372 920 Gene3D - 38 187 - -
Ssu5g0372 920 Gene3D - 373 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0372 Ssu-Chr5 7955345 7960095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0372 1 920 Glycoside Hydrolase AT1G58370 66.808 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0372 - - gmx:100816678 1760.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0372 5 7955345 7960095 Ssu5g0372 5 7955345 7960095 ECH