Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0368 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGCCCATGGTCCCCAGAAGAAGATGCTAAGCTCAAGTCCTACATAGAAAAAAACGGCACCGGCGGTAACTGGATTGCTTTGCCTCAAAAAATggGCCTGAAGCGTTGTGGCAAGAGTTGCCGCCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAAGCACGGTGGTTTCTCCGAAGAAGAAGACAACATTATTTGCAGCCTCTACATCAGTATTGGAAGCAgGTGGTCGGTCATTGCAGCTCAATTGCCAGGAAGAACCGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTGGGGAAGCACCGAAGAGAGCCACGCAATAGAGGCAATTACATTAAGCGAGAAAGTGATGTTAATAGAGGGAGTAGTGACGGTGATTCTTCTCCCTTATCCTTGGTTCAGGAAAATAGTAGcaccactcaacaacaacaacaaccatgtTGGCCACTGAATATTAATATGCCTGTGCTACCGTTACCAGTAACTTTGCCATACGCAGACCAAGGTCCATGTTTCAACGACCAAGATTCTATCAAAAAACTGCTTATCAAGCTGGGAGGGAGATTTTCAGGTGATTATTACCATCCTACCCTTGATGGGTTGAATCTTCAATTCTCAGATGGgcaacaaaattttcaagaacaaGTCCATGTTGGCTCTTCTTCTTCTGCTTGCATTGCCAACAATGAGGTACAATTTGCACAAACTGGTCAATACTGCAATGCACTGGGTGCTAGAGTTGAGGACTTGGTGCAAGGACAAGGTAGTAATTTCACTCCATCATTTGAGGAAATGGGATCTTCTTCTAATTATCCAGATGGGTTGGAGTTCTTATATGGGGAGGGCATTATCGACCATAAGATAATAGACTCTACTGTTACTACTACTCGTGGCCAAAGTGCTACCACAAACTGGGGTGAAACTAGCACTCCtatttatcatcatcatcatcatcattcgCTTGCTTCCAATTACCAAGGTCAAGTTGTGAGGCAAGAATGTGCTTTGCAAGAGTTTAGCTACCCCGGGGCACAATAA 1098 0.4189 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKNGTGGNWIALPQKMGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYIKRESDVNRGSSDGDSSPLSLVQENSSTTQQQQQPCWPLNINMPVLPLPVTLPYADQGPCFNDQDSIKKLLIKLGGRFSGDYYHPTLDGLNLQFSDGQQNFQEQVHVGSSSSACIANNEVQFAQTGQYCNALGARVEDLVQGQGSNFTPSFEEMGSSSNYPDGLEFLYGEGIIDHKIIDSTVTTTRGQSATTNWGETSTPIYHHHHHHSLASNYQGQVVRQECALQEFSYPGAQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0368 365 Gene3D - 70 140 - -
Ssu5g0368 365 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu5g0368 365 CDD SANT 71 113 IPR001005 -
Ssu5g0368 365 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu5g0368 365 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ssu5g0368 365 Gene3D - 7 68 - -
Ssu5g0368 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu5g0368 365 CDD SANT 16 62 IPR001005 -
Ssu5g0368 365 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu5g0368 365 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu5g0368 365 SMART sant 13 64 IPR001005 -
Ssu5g0368 365 SMART sant 67 115 IPR001005 -
Ssu5g0368 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ssu5g0368 365 MobiDBLite consensus disorder prediction 124 141 - -
Ssu5g0368 365 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 320 - -
Ssu5g0368 365 PANTHER OS09G0431300 PROTEIN 1 320 - -
Ssu5g0368 365 MobiDBLite consensus disorder prediction 142 158 - -
Ssu5g0368 365 MobiDBLite consensus disorder prediction 119 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0368 Ssu-Chr5 7757456 7759166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0368 1 204 MYB Transcription Factor Family AT3G49690 62.319 2.36e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g0368 Myb_DNA-binding 7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0368 K09422 - gmx:100800290 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0368 5 7757456 7759166 Ssu5g0368 5 7757456 7759166 ECH
Ssu5g0368 5 7757456 7759166 Ssu1g3669 1 92486801 92488140 PCT