Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0363 ATGGTGGATCCGTACATCCTCGGTTGGATTCTGTGCTCCGTTCTGAGTCTCTTCGCGCTGTACAGTTTGGCTTGCGCCGGAACGAGCCGTCCGGAGAAGAGGAACGAGTTGTCGGAGTCTGTGACGACCACCGCCGGAGAATGCGGATCGGAGAACCGCAAAGGCGATGCTGACGTCATCATTGTCGGAGCCGGCGTCGCCGGCGCCGCCCTGGCGCACACTCTCGGCAAGGATGGGCGTCGAGTACACGTCATTGAAAGAGATCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTACAACCCGGGGGCtatctcaaattaattgagcTGGGACTTGAAGATTGTGTGGACAAAATTGATTCTCAGCAAGTGTTCGGTTATGCCCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTACCCCTTGGAGAAGTTTCACGCAGATGTCTCTGGCAGAAGCTTTCACAACGGGCGCTTTATTCAGAGGATGAGGGAGAAGGCTGCCTCCCTTCCCAATGTACGATTGGAGCAAGGAACAGTCACTTCCCTAGTTGAAGAGAAGGGGGCAATTAAAGGTGTGCAATATAAGACCAAAGATAGTCAGGAATTGACAGCATATGCACCTCTTACCATTGTTTGTGACGGCTGCTTCTCAAACTTACGTCGTTCTCTTTGTAATCCTAAGGTAGATATTCCCTCATGTTTTGTTGGTTTAGTTTTAGAGAACTGTGAACTTCCATGTGCAAATCATGGCCACGTCATACTGGGAGATCCTTCGCCAATTCTTTTCTATCCAATAAGTAGTACAGAGATTCGCTGTCTTGTCGATGTACCTGGTCAGAAGGTTCCTTCTATTTCAAACGGCGAAATGGAAAAGTATTTGAAGACAACGGTGGCTCCACAGATTCCCCCCGAGCTTTATGATGCCTTCATAGCTGCTGTGGACAAAGGCAACATAAGGACAATGCCGAACAGAAGCATGCCAGCAGATCCTCATCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGGCATCCACTAACAGGGGGCGGAATGACCGTAGCATTGTCTGATATTGTGGTGCTGAGAAATCTTCTAAGGCCTTTGCGTGACCTGAATGATGCACCCACACTCTGCAAATACCTTGAATCGTTTTATACCTTGCGTAAGCCTGTGGCATCCACCATAAATACATTGGCAGGTGCCCTTTACAAAGTTTTTTGTGCATCCCCTGATCAGGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCCTTGGAGGCCTATTCTCCGAAGGACCAGTCTCTTTACTTTCTGGATTAAACCCTCGTCCCTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCAATATTTGGTGTGGGCCGTCTATTGTTCCCATTTCCTTCACCTAAGCGAATATGGATTGGGGCCCGATTAATCTCTGGTGCATCTGGAATCATCCTCCCCATAATTAAGGCTGAAGGGATTCGTCAGATGTTTTTCCCTGCAACTGTTCCAGCTTATTACAGAACTCCTCCGGTTGCACAATAG 1569 0.4812 MVDPYILGWILCSVLSLFALYSLACAGTSRPEKRNELSESVTTTAGECGSENRKGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDSQQVFGYALFKDGKHTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLVEEKGAIKGVQYKTKDSQELTAYAPLTIVCDGCFSNLRRSLCNPKVDIPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMEKYLKTTVAPQIPPELYDAFIAAVDKGNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIFGVGRLLFPFPSPKRIWIGARLISGASGIILPIIKAEGIRQMFFPATVPAYYRTPPVAQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0363 522 Pfam Squalene epoxidase 208 480 IPR013698 GO:0004506|GO:0016021|GO:0050660
Ssu5g0363 522 Gene3D - 50 432 IPR036188 -
Ssu5g0363 522 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 522 - -
Ssu5g0363 522 Pfam NAD(P)-binding Rossmann-like domain 61 87 - -
Ssu5g0363 522 PANTHER SQUALENE MONOOXYGENASE 1 522 IPR040125 GO:0004506|GO:0016126
Ssu5g0363 522 SUPERFAMILY FAD/NAD(P)-binding domain 57 431 IPR036188 -
Ssu5g0363 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 207 222 - -
Ssu5g0363 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 335 350 - -
Ssu5g0363 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 350 366 - -
Ssu5g0363 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 58 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0363 Ssu-Chr5 7670412 7674806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0363 33 519 Miscellaneous Gene Families AT1G58440 79.675 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0363 K00511 - gmx:100804406 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0363 5 7670412 7674806 Ssu5g0363 5 7670412 7674806 ECH
Ssu5g0363 5 7670412 7674806 Ssu1g3674 1 92608410 92610688 PCT