Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0358 ATGCTGATGGTGATGCCTGTGAAAGATTTTCCTGGGAAGACCTCTGATGGTCCAAAAGAGCATGAAAAGAAACCAAAAGTTGAGCAGAATAATAGTGCAGATTTGCGTGGTAAGCAATCAGTGAAGCAAGCTAAAGACAACAATTCTCAAAGTGGAGAAGCTCCCAATGAAAATTTCATTCACGTGAGAGCTAGAAGAGGTCAAGCCACAAATAGCCACAGCCTTGCAGAAAGGgtgagaagagaaaagattagTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCTGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTTAACCCAGAACTGAACTTCGATGTAGACCGGATCCTATCTAAGGATATTCTCCAATCACGCATAGGACATGGAATTGGTACATATGGTCCTGGTATCAATTCCTCTCACACATTCCCTAGTGGAAGTTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCagACTGTTTTGGACCACGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTCATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 687 0.4207 MLMVMPVKDFPGKTSDGPKEHEKKPKVEQNNSADLRGKQSVKQAKDNNSQSGEAPNENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGIGTYGPGINSSHTFPSGSFHGTLAGMPSTSSQFPPLPQTVLDHEFQSFYGIGYDSHTALDNLGPNGRLKTEL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0358 228 MobiDBLite consensus disorder prediction 13 31 - -
Ssu5g0358 228 CDD bHLH_AtBPE_like 58 143 - -
Ssu5g0358 228 MobiDBLite consensus disorder prediction 1 57 - -
Ssu5g0358 228 SMART finulus 74 124 IPR011598 GO:0046983
Ssu5g0358 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 136 IPR036638 GO:0046983
Ssu5g0358 228 Gene3D - 65 139 IPR036638 GO:0046983
Ssu5g0358 228 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 7 228 IPR024097 GO:0006355
Ssu5g0358 228 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 228 - -
Ssu5g0358 228 MobiDBLite consensus disorder prediction 32 56 - -
Ssu5g0358 228 Pfam Helix-loop-helix DNA-binding domain 71 119 IPR011598 GO:0046983
Ssu5g0358 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0358 Ssu-Chr5 7603372 7604805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0358 36 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 63.590 6.61e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g0358 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0358 - - gmx:100801930 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0358 5 7603372 7604805 Ssu5g0358 5 7603372 7604805 ECH