Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0356 ATGAAGCCCATGAATGATAGCAACACCGATGATGGCAACAATCATAACTGGTTAGGGTTCTCTCTCTCGCCCCACATGAAAATGGATGTTACTTCTTCTGGCCCTccccatcatcatcatcatcactacTATCATCACCCCCAGGCTTCTGCTGctgcagcagcagcagcagcttGCAACACTGTTCCCACTAACTTCTACATGTCACCTTCACACCTCAACGCCCCAGGAATCTGTTATGGTATTGGAGAGAACAGTGCCTTTCACACTCCCTTGGCCATGATGCCTCTTAAGTCTGATGGGTCACTTTGCATCATGGAAGCTCTCAGCAGATCACAAACCCAAGTGATGGTGCCAACTTCATCTCCAAAGCTTGAGGACTTCCTAGGTGGTGCAACTATGGGAGCTCAAGACTATGGAGGCCATGAAAGAGAAGCAATGGCTCTAAGCCTAGACAGCATATACTATAGTAACCAAAATGCGGAACCTGAAACCAACAGAGaccattcttcttctttggaCCTTCTTTCTGACCCCTTCAGGCAACAAACCCATCCATACTACTCGGGGCTTGGGATTTACCAAGTAGAGGAAGAGGAAGCCAAGGAACCCCACGTGGCAGTTTGCAGCTCCCAGGTGCCTCAAGTGGTGGATGAAGGCATTGCTTGCTTCAAAAACTGGGTGCCCCCCAGAGAATATTCTTCTGCTCAGCACAATCTGGAGCAGCATCAAGTGAATAGTAGCAGTGGCATGGGGGAGGATCATGGTGCTTCTGGGAATGTTGGTGTTGGAAGAGTTGGTTGTGGGGAGTTACAGTCTCTAAGCTTGTCTATGAGTCCTGGTTCTCAGTCAAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCTGGGACTAATTCAGTACCTGTGGATGCCAAAAAGAGAGGGTCTGGTAAGCTTGGCCAGAAGCAGCCTGTGCATAGGAAATCCATTGACACGTTCGGGCAGAGAACTTCTCAGTATAGAGGCGTGACAAGGCATAGATGGACTGGTAGATATGAAGCGCACTTGTGGGATAACAGTTGCAAGAAGGAAGGACAAACCAGGAAAGGACGACAAGTTTACTTAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCGTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAATACGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGAGTGACAAGGCACCACCAACATGGCCGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGCACTCAAGAAGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTTCGTGGGGTGAATGCTGTCACCAACTTTGACATATCTAGATACGATGTTGAAAGAATCATGGCCAGCAACACCCTTCTTGCGGGAGAGCTAGCTAGAAGAAACAAGGACAGTGAGCCAAGAACTGGGGCCATCGAGTACAACGTTGTGTCAAGCCAACAAGTCATGAACAGGGAAGAGGTTGAAGCTGTGAACAACGACAATGAAAATGGTTCATCAGATTGGAAGATGGGTTTGTATCATCAGCAACAGTCAAACAACAACTGTGACCAGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCCTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGCAGGATCTAGCCAGGCCATGCTAGATGAGTCTACCAAGATAGGGACTCATTTTTCAAACCCCTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGATAAAACGGGTCCCACTTTGCTCTTTCCAAAGCCTCCAATGGGATCAAAGATTGTTACTAGCCCTATTGCTAATGGTGTCACTGTTGGCTCTTGGTTTCCCTCTCAAACGAGGCCTGCTGCTGCAGCTATCTCAATGTCTCATTTGCCCCTTTTTGCGGCTTGGAGTGATACCTAG 2079 0.4618 MKPMNDSNTDDGNNHNWLGFSLSPHMKMDVTSSGPPHHHHHHYYHHPQASAAAAAAAACNTVPTNFYMSPSHLNAPGICYGIGENSAFHTPLAMMPLKSDGSLCIMEALSRSQTQVMVPTSSPKLEDFLGGATMGAQDYGGHEREAMALSLDSIYYSNQNAEPETNRDHSSSLDLLSDPFRQQTHPYYSGLGIYQVEEEEAKEPHVAVCSSQVPQVVDEGIACFKNWVPPREYSSAQHNLEQHQVNSSSGMGEDHGASGNVGVGRVGCGELQSLSLSMSPGSQSSCVTVPTQISSSGTNSVPVDAKKRGSGKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDSEPRTGAIEYNVVSSQQVMNREEVEAVNNDNENGSSDWKMGLYHQQQSNNNCDQKTMKCGNYRGSAFSVSLQDLIGIDSAGSSQAMLDESTKIGTHFSNPSSLVTSLSSSREGSPDKTGPTLLFPKPPMGSKIVTSPIANGVTVGSWFPSQTRPAAAAISMSHLPLFAAWSDT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0356 692 SMART rav1_2 333 405 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 SMART rav1_2 435 499 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 MobiDBLite consensus disorder prediction 617 646 - -
Ssu5g0356 692 Pfam AP2 domain 333 391 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 Pfam AP2 domain 436 485 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 MobiDBLite consensus disorder prediction 235 254 - -
Ssu5g0356 692 PRINTS Ethylene responsive element binding protein signature 475 495 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 PRINTS Ethylene responsive element binding protein signature 334 345 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 ProSiteProfiles AP2/ERF domain profile. 435 493 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 MobiDBLite consensus disorder prediction 287 320 - -
Ssu5g0356 692 CDD AP2 332 399 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 MobiDBLite consensus disorder prediction 287 303 - -
Ssu5g0356 692 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 690 - -
Ssu5g0356 692 SUPERFAMILY DNA-binding domain 434 495 IPR016177 GO:0003677
Ssu5g0356 692 MobiDBLite consensus disorder prediction 617 635 - -
Ssu5g0356 692 SUPERFAMILY DNA-binding domain 332 401 IPR016177 GO:0003677
Ssu5g0356 692 Gene3D AP2/ERF domain 332 401 IPR036955 GO:0003700|GO:0006355
Ssu5g0356 692 Gene3D AP2/ERF domain 435 495 IPR036955 GO:0003700|GO:0006355
Ssu5g0356 692 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 690 - -
Ssu5g0356 692 MobiDBLite consensus disorder prediction 235 260 - -
Ssu5g0356 692 ProSiteProfiles AP2/ERF domain profile. 333 399 IPR001471 GO:0003700|GO:0006355
Ssu5g0356 692 CDD AP2 434 495 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0356 Ssu-Chr5 7557595 7561309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0356 416 692 AP2-EREBP Transcription Factor Family AT4G37750 26.774 4.71e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Ssu5g0356 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0356 K09285 - gmx:100798179 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0356 5 7557595 7561309 Ssu5g0356 5 7557595 7561309 ECH
Ssu5g0356 5 7557595 7561309 Ssu1g3677 1 92724326 92727708 PCT