Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0353 atggATCTTGGGGTGGTGGGTTTGGACGGGTTGGTGGGTTCAGACAGTGGTGCGTTTGGTTCCTCTCTTGCTTCAGATCCTGAGACAAAGCACAAGTGGTACGGATCTGGGGTGCTTAAGCAAGGGAGATCTGGCACCAGCGAAGATGAGTGGAGGAGTTCAAAAGTGGCCAAGACTGATGACATGTCTGCTGCCTCCAAAGCAATGCTGTTTCACCAGAGAAACTCTTTGCTGAGATCTAATGCCACTCTCTTCTCTGATGGTCACCACCAACCACAAATGCTGAGCTTCTCTTCTCCAAAATCAGAACCTTTGTTGGTAGATAAGGCCTCCGCAAATGCCACATTGCCTTTTTCTTACCACCAGTTGTCTAGTAATTACAGCAGAAATACAGGTTACAGTTCGGGAAGCATGCATGGGGCTTTGGCCGGTGTGAGAGGACCATTTACTCCGTCTCAGTGGATGGAGCTTGAACACCAGGCGTTGATCTACAAGTACATCACAGCAAATGTTCCCGTACCCACTCATCTGCTCGTCCCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTCTCAACCGGACTCCTCAGACCCAACGCACTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACGGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCGAGAGATGCCGTAGTGGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGccctcaccaccaccaccaccaccaccactactccTAATACTTCCTCAAACTCCATTGTGGTGCCCGGCAACAACACCTTTGCACACCACCAACCCAACAACAATGTGCATCACCCTCTTCCACCTCATGCCTCTCCCACCAACACCATCAACAGGATGTTTATGAGTAACAAAGAGAGCAACAACGCGAGTGAGAGGATGCAGGATGGCCCTGCCCTTCCCATGCTGCCTCCCACACTTGAGCTGAAACCAAAGGAGAACAACCCTTTCATGATTCACAAGCACCAAATCCCATATGATGAATCCTCAAGGAACAACAATGAGTTTGGACTTGTCACTTCTGATTCCTTGCTTAACCCTTCACAGAAAAGAAGCTTTGGTTCTTCTTCACAAAAGGATGATTCTGAGTCCCAACAACACTCCCTCAGGCATTTCATTGATGACTCTCCCAAACCACAGTCTCATCATCACCGCTCTGGCGTTTGGCCTGAACTTGACATGCAGCCAGATAGGACTCAGTTATCAATCTCCATACCAATGTCTTCCTCAGACTTCATGTCATTCACTACTTCCTCACCCTCCAATGAGAAACTCACGTTGTCTCCACTGAGGCTATCAAGGGAGTTAGACCCCATTCAGATGGGTTTGGGAGTGGGAAGTGCCCCCGATGAGTCACACACTAGGCAGGCCAATTGGATTCCAATCACTTGGGAGAGTTCTATGGGTGGTCCTCTCGGAGAGGTTTTGAACCTTAGCAGTAGTAATAACAACAGCAATGCAAGTGATCAATGTGGCAAGAACACTTCTGCCCTCAACCTCATGAAAGATGGGTGGGACAATAGTCCTCCACTAGGGTCATCCCCAACTGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAGAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAA 1770 0.4825 MDLGVVGLDGLVGSDSGAFGSSLASDPETKHKWYGSGVLKQGRSGTSEDEWRSSKVAKTDDMSAASKAMLFHQRNSLLRSNATLFSDGHHQPQMLSFSSPKSEPLLVDKASANATLPFSYHQLSSNYSRNTGYSSGSMHGALAGVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLVPIRKALDSAAFCNFSTGLLRPNALGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTTTTTTPNTSSNSIVVPGNNTFAHHQPNNNVHHPLPPHASPTNTINRMFMSNKESNNASERMQDGPALPMLPPTLELKPKENNPFMIHKHQIPYDESSRNNNEFGLVTSDSLLNPSQKRSFGSSSQKDDSESQQHSLRHFIDDSPKPQSHHHRSGVWPELDMQPDRTQLSISIPMSSSDFMSFTTSSPSNEKLTLSPLRLSRELDPIQMGLGVGSAPDESHTRQANWIPITWESSMGGPLGEVLNLSSSNNNSNASDQCGKNTSALNLMKDGWDNSPPLGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKEGATLCNAL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0353 589 MobiDBLite consensus disorder prediction 517 589 - -
Ssu5g0353 589 MobiDBLite consensus disorder prediction 247 306 - -
Ssu5g0353 589 MobiDBLite consensus disorder prediction 517 540 - -
Ssu5g0353 589 ProSiteProfiles QLQ domain profile. 148 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu5g0353 589 MobiDBLite consensus disorder prediction 362 433 - -
Ssu5g0353 589 Pfam WRC 218 260 IPR014977 -
Ssu5g0353 589 PANTHER GROWTH-REGULATING FACTOR 9 25 581 - -
Ssu5g0353 589 MobiDBLite consensus disorder prediction 401 429 - -
Ssu5g0353 589 Pfam QLQ 148 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu5g0353 589 MobiDBLite consensus disorder prediction 36 58 - -
Ssu5g0353 589 ProSiteProfiles WRC domain profile. 217 261 IPR014977 -
Ssu5g0353 589 MobiDBLite consensus disorder prediction 547 580 - -
Ssu5g0353 589 PANTHER - 25 581 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu5g0353 589 SMART QLQ_2 147 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu5g0353 589 MobiDBLite consensus disorder prediction 262 306 - -
Ssu5g0353 589 MobiDBLite consensus disorder prediction 367 400 - -
Ssu5g0353 589 MobiDBLite consensus disorder prediction 324 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0353 Ssu-Chr5 7339961 7344086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0353 40 563 GRF Transcription Factor Family AT2G22840 43.094 2.56e-107 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu5g0353 WRC 5.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0353 - - gmx:100818860 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0353 5 7339961 7344086 Ssu5g0353 5 7339961 7344086 ECH