Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0350 ATGGCAAATAATTCTCAGCCCTCCAGCATGCAGTTTCGGCCAGTCATTCAAGCTCAGCAAGGGCAACCATTTGTTCCAATGAATTCACAACAATTTGGACCTGCAGGACATGCTATTTCTTCTTCAAATGTGGGAATGCCTGTCATTCAAGGTCAGCAATTGCAGTATTCTCAACCAATGCAGCAGTTGGCTCCAAGACCAATGCAGCCTGGTCATCCTGCTCCATCATCACAAGCTATACCTATGCCATATATTCAGACGAACAGGCCACTGACATCCATTCCGCCACATTCCCAGCAAACTGTTCCCCCCTTAAGCAATCATATGCCTGGCTTGGCTGTTTCAGGAGCAGCTCCATATACTTTCCCGCCATCTTATGGTCAGCAGCAAGATAATGCAAATGCTTTGGCTCAATACCAGCATCCACCTCAAATGCTTGCTCCTCCTGCTGGACAACCTTGGCTATCCTCTGCATCTCAGAGTGTCGCAGCTGCTATGTCTGTGCAGCCAGCTGGGGTACAATCATCTGGTACTACATCAACTGATGCCGCAACTACTGCTACTAACCAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCTGATGGGAGAAGATATTACTACAACAAGAGGACGAGGCAATCAAGTTGGGAGAAACCTTTGGAATTGATGTCACCTATTGAGAGAGCTGATGCATCAACTGTTTGGAAAGAATTCACTTCTTCAGAAGGAAGAAAGTATTATTACAACAAGGTTACTCATCAATCAACGTGGTCAATACCAGAGGAACTTAAGTTGGCTCGTGAGCAGGCACAGAAAGCTGTCAACCAGGGAATGCAGTCAGAAACAAGTGATACATCCAATGTTGTTGGCTCCTCCACAGCAACATCAACAGCAGCTAATGCAGCTAGCTTGAACACTTCTTTGACATCAAATGGGCTTGCTTCCAGCCCATCTTCTGTCACCCCAATTATAGCAACTGATTCTCAACAGTTGGTTTCTGGATTATCTGGGACCTCTGTTTCCCACTCTCTGGTCACCTCAAGCACCACAGGAGTTGAACCAAGCACCGTGGTAACTACGAGCGCTGCACCTACAATAGTTGCAGGAAGCTCTGGACTAGCTGAGAATTCACCTCAACAATCCAAAATGCCACCTATTGTTGAAAATCAAGCATCTCAAGATTTTGCTTCTGTAAATGAATCTTCTCTTCAAGATATTGagGAAGCCAAAAGAGGATTGCCTGTGGCcggaaaaaataatatagttccACCTGAGGAGAAAACCAATGACGATGAAACCTTGGTATATGCAAATAAGCTGGAAgcaaaaaatgcatttaaagCACTTTTGGAATCTGTGAATGTTCAGTCTGATTGGACATGGGAACAGGCAATGAGAGATATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGGGAGCGAAAACAAGCTTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTGGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAAAGCCCGCGAAGAATTCACAAAGATGTTGGAAGAGTGCAAGGAACTTACATCATCCATGAGATGGAGCAAAGCTATTAGTATGTTTGAAAATGATGAACGATTCAAAGCTGTTGAAAGACCAAGAGACCGAGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAAAAGGAAAATGCTGCAGAGGAACACCGGAGGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGATTATGTTAAGgtGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTgcgacttgaaaaaattgaccgCTTGCTAGTTTTCCAgGACTATATTCGGGACTTGgagaaagaagaggaggaaCAAAAAAGAATACAGAAGGATCGAATCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTTGAAGAACATGTTGCTGCTGGAATCCTTACTGCTAAAACTCAATGGCGAGAATATTGCTTGAAGGTCAGGGATTTACCTCAGTATCAAGCTGTTGCGTCAAATCCATCTGGTTCCACTCCAAAAGATTTATTTGAGGATGTTGCTGAGGATCTTGAAAAACAGTATCATGAAGACAAGACACTCATAAAAGATACAATTAAGTCAGGCAAGATCATTGTAGTGACTACATCAGTATTTGAGGACTTTAAGGTTGCTGTCTTGGAAGAAGCTGCATGCCAAACAATATCCGAGATCAATTTGaagCTTATATTCGAAGAGTTGTTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACATGTTATATACTTTCAAGgatATTACCACTTCTTCAAAATGGGAAGATTGCAAGCCACTTTTGAGGAGACTCAAGAGTACAgGGCAATTGGGGACGAAAGTTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTAA 2517 0.414 MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAISSSNVGMPVIQGQQLQYSQPMQQLAPRPMQPGHPAPSSQAIPMPYIQTNRPLTSIPPHSQQTVPPLSNHMPGLAVSGAAPYTFPPSYGQQQDNANALAQYQHPPQMLAPPAGQPWLSSASQSVAAAMSVQPAGVQSSGTTSTDAATTATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSEGRKYYYNKVTHQSTWSIPEELKLAREQAQKAVNQGMQSETSDTSNVVGSSTATSTAANAASLNTSLTSNGLASSPSSVTPIIATDSQQLVSGLSGTSVSHSLVTSSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPIVENQASQDFASVNESSLQDIEEAKRGLPVAGKNNIVPPEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMRDIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKKAREEFTKMLEECKELTSSMRWSKAISMFENDERFKAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLEEHVAAGILTAKTQWREYCLKVRDLPQYQAVASNPSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEDFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNMLYTFKDITTSSKWEDCKPLLRRLKSTGQLGTKVIVEKFLRNTSHT 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0350 838 SUPERFAMILY WW domain 195 229 IPR036020 GO:0005515
Ssu5g0350 838 Gene3D - 189 230 - -
Ssu5g0350 838 ProSiteProfiles WW/rsp5/WWP domain profile. 231 264 IPR001202 GO:0005515
Ssu5g0350 838 MobiDBLite consensus disorder prediction 172 198 - -
Ssu5g0350 838 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 4 820 - -
Ssu5g0350 838 SUPERFAMILY FF domain 502 570 IPR036517 -
Ssu5g0350 838 ProSitePatterns WW/rsp5/WWP domain signature. 237 262 IPR001202 GO:0005515
Ssu5g0350 838 CDD WW 194 223 IPR001202 GO:0005515
Ssu5g0350 838 Pfam FF domain 510 560 IPR002713 -
Ssu5g0350 838 Pfam FF domain 443 492 IPR002713 -
Ssu5g0350 838 Pfam FF domain 579 627 IPR002713 -
Ssu5g0350 838 Pfam FF domain 652 707 IPR002713 -
Ssu5g0350 838 ProSiteProfiles FF domain profile. 508 563 IPR002713 -
Ssu5g0350 838 Coils Coil 765 789 - -
Ssu5g0350 838 ProSitePatterns WW/rsp5/WWP domain signature. 196 221 IPR001202 GO:0005515
Ssu5g0350 838 Pfam WW domain 237 262 IPR001202 GO:0005515
Ssu5g0350 838 Pfam WW domain 194 221 IPR001202 GO:0005515
Ssu5g0350 838 ProSiteProfiles FF domain profile. 648 711 IPR002713 -
Ssu5g0350 838 Coils Coil 557 586 - -
Ssu5g0350 838 SUPERFAMILY FF domain 568 637 IPR036517 -
Ssu5g0350 838 Coils Coil 624 644 - -
Ssu5g0350 838 Gene3D - 231 289 - -
Ssu5g0350 838 ProSiteProfiles FF domain profile. 576 630 IPR002713 -
Ssu5g0350 838 Coils Coil 489 512 - -
Ssu5g0350 838 SUPERFAMILY FF domain 643 718 IPR036517 -
Ssu5g0350 838 SMART FF_2 576 630 IPR002713 -
Ssu5g0350 838 SMART FF_2 508 563 IPR002713 -
Ssu5g0350 838 SMART FF_2 441 495 IPR002713 -
Ssu5g0350 838 SMART FF_2 650 711 IPR002713 -
Ssu5g0350 838 SUPERFAMILY WW domain 236 269 IPR036020 GO:0005515
Ssu5g0350 838 Gene3D FF domain 497 571 IPR036517 -
Ssu5g0350 838 Gene3D FF domain 572 639 IPR036517 -
Ssu5g0350 838 Gene3D FF domain 640 721 IPR036517 -
Ssu5g0350 838 SUPERFAMILY FF domain 433 495 IPR036517 -
Ssu5g0350 838 CDD WW 237 264 IPR001202 GO:0005515
Ssu5g0350 838 Gene3D FF domain 441 496 IPR036517 -
Ssu5g0350 838 ProSiteProfiles WW/rsp5/WWP domain profile. 194 223 IPR001202 GO:0005515
Ssu5g0350 838 ProSiteProfiles FF domain profile. 441 495 IPR002713 -
Ssu5g0350 838 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 4 820 IPR039726 GO:0045292
Ssu5g0350 838 SMART ww_5 191 223 IPR001202 GO:0005515
Ssu5g0350 838 SMART ww_5 232 264 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0350 Ssu-Chr5 7293624 7305895 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0350 K12821 - gmx:100806019 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0350 5 7293624 7305895 Ssu5g0350 5 7293624 7305895 ECH