LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0348	ATGGAGAAGATCTGCGTCGCCGTTCGTCTTCGCCCTCCGGTTTCCGAAGACTCTTCTTCCGTCGGAACCTTCTGGAAGGTCGAAGATAACCGCATCTCTCTTCACAAGATCCACGGAACTCCACTCTCTGCCTCTTCTTACGCTTTCgATCACATATTCGACGAAAGAAGCACCAATGCTAGCGTCTACGAGCTCCTCGCCAAGGATATCATTCATGCCGCGCTCGACGGCTTCAACgGAACTGCATTTGCGTATGGGCAGACCAGTAGTGGCAAGACTTTCACCATGAATGGTTCTGAAACTGACGCAGGAGTGATTCCTCTGGCAGTTAGAGACATATTTGCGACAATTGAGACAATGTCTGATCGAGAGTTTCTGATACGAGTTTCCTACATGGAGATCTACAACGAAGAAATCAATGACCTTCttgttgttgaaaatcagaaatTGCCAATTCATGAGAGTTTAGAGCGTGGAGTATTTGTTGCAGGGCTGAAAGAGGAAATTGTTAACAATGCTGAACAAGTGCTGAATCTCATTAAAGCAGGGGAAGTTAACAGACACTTTGGTGAGACAAATATGAATGCAAGGAGTAGCAGATCGCACACAATATTTAGAATGGTGATTGAAAGCAAAGCAAAGGATTCCATTTCTTCCAATGATTGTTCGATTAATGATGTTGTTCGAGTTTCAGTCTTGAATTTAGTAGATCTAGCTGGTTCTGAAAGGATTGCTAAGACTGGAGCCGATGGAGTACgtttaaaagaaggaaaatatattaacaagagCTTGATGGTTTTGGGAAACGTTATTAACAAACTAAGCGAGGGTTCAAAGCAAAGGGGGCATATCCCGTATCGTGATAGTAAATTAACTCGTATACTCCAACCTGCTCTTGGTGGTAATGCCAAAACGTCCATTATTTGTACCATAGCCCCAGATGAGATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGTAGAGCCAAACGCATAACGAATTGCGTTCAAGTGAACGAGATATTGACGGATGCAGCCTTGTTAAAACGGCAACAATTAGAGATAGAGGAGCTACGTAAGAAGCTTCAGgGATCCCATGCTGAGGTGCTCGAGCAAGAGATTCTTAAACTCAGGAATGATTTGCTCAAGTATGAAAGGGAGCGTGGGAAGCTTGAAATGGAACTGCAAGAGGAGAGGAAATCACGTGATCAATGGATTAGGGAGCAAcggatgaaaattgaaaattccaCTACTAAATCTTTCTCAGAATGTGGGACGAACGACAGTCAGGGACCGGGATTTTTGAGGCATGGATTTATGGAAGAGTACAGTGACATTAGTAGTATATCTCAAGGAGATATTTTCAAATCTCCTAAGGCAGATCCCAGTGTTTTTGTAGCCAGGCGATCGAAGTATTCATCATTGCCAGATTGCAGCCCTCTTCCAGATGCTTTCAGTAATGTGGCTGATGAAGATATGTGGTTGAAAATGAACAACGGTTATGTTGCAGACCTTGATTCCCTTCAAACTACTCCCAATCGAAAAGTTCAGTCATTCCCGACAAGTGATACAACTGCTGTTTGTACAAGTGAAATTGAAAAGTATGAACGAGAGATTCAAGGTTTGAGGAGACAACTGGAACTTGCTAAAGAAAGGATAAATGAACTCGAGCAAAAGCATTCAGAGGAAGCGCCATCAAGCAAGCAATTAATGGGAGAGACACCTAAACATCAACAAGAAACGCAACTAATTCATGAATTGCCTGTGAGGTTATCTGAATCTGTGGGAAATTTCAAAGATAGCTTTGAGGAGGTTTTGTCAGTAATGCAGAGATTTGCATCGGGTGGCACATTATCATCTGCGAAGATACTTTCAACCGTCAGTGAAATTGGAGCTCATCTATTTGCAACTTTGGAAGGTCATTTTGCAGTGAATATGGGTGGTGAAAGGTCTTCCACTGGGAACTGTACTTTAATCAATGAACAACAAAAAGTGTTTCGTGAGaggattgataatataattacatCACTGGAGTTATCGGAAAGCTCAATAACAGGACAGGAGAGGAAACATAAGTGCAGCTGTGAACACAAGGGCTCTGGTTTGGGAGGAGAGACTGCTTACTCAAAGGAGGATTTAAATGAAAGGTATGAAAACCTGGAAAGGGAGTTACTACTTTTGAAGGTCGAAAGAGACTCTTTGCTGCAGAAGTTCTCTGAATCATCCGAGAAACTAGCTATGGCTGAAAGCCAAAAGGAAATTgctttaaaagatttaaatactGAAGTACAGAGAAGGAAAAATCTAGAAGGGGAGGTTAAGCAGTTTACTGCAGCTTTTGCTAGTCGTCAGAAATCACTCATTTCCTTCCATAGTGATCTTAAGACCAAGATTGAGAAATGGAGAATACAGACTCCAATCTCCGTGCCCAAATCTTTTGGGTGTCAGGACTAG	2460	0.4081	MEKICVAVRLRPPVSEDSSSVGTFWKVEDNRISLHKIHGTPLSASSYAFDHIFDERSTNASVYELLAKDIIHAALDGFNGTAFAYGQTSSGKTFTMNGSETDAGVIPLAVRDIFATIETMSDREFLIRVSYMEIYNEEINDLLVVENQKLPIHESLERGVFVAGLKEEIVNNAEQVLNLIKAGEVNRHFGETNMNARSSRSHTIFRMVIESKAKDSISSNDCSINDVVRVSVLNLVDLAGSERIAKTGADGVRLKEGKYINKSLMVLGNVINKLSEGSKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPDEIHIEETRGTLQFASRAKRITNCVQVNEILTDAALLKRQQLEIEELRKKLQGSHAEVLEQEILKLRNDLLKYERERGKLEMELQEERKSRDQWIREQRMKIENSTTKSFSECGTNDSQGPGFLRHGFMEEYSDISSISQGDIFKSPKADPSVFVARRSKYSSLPDCSPLPDAFSNVADEDMWLKMNNGYVADLDSLQTTPNRKVQSFPTSDTTAVCTSEIEKYEREIQGLRRQLELAKERINELEQKHSEEAPSSKQLMGETPKHQQETQLIHELPVRLSESVGNFKDSFEEVLSVMQRFASGGTLSSAKILSTVSEIGAHLFATLEGHFAVNMGGERSSTGNCTLINEQQKVFRERIDNIITSLELSESSITGQERKHKCSCEHKGSGLGGETAYSKEDLNERYENLERELLLLKVERDSLLQKFSESSEKLAMAESQKEIALKDLNTEVQRRKNLEGEVKQFTAAFASRQKSLISFHSDLKTKIEKWRIQTPISVPKSFGCQD	819

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0348	819	Coils	Coil	712	739	-	-
	Ssu5g0348	819	CDD	KISc_CENP_E	3	334	-	-
	Ssu5g0348	819	ProSitePatterns	Kinesin motor domain signature.	231	242	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Ssu5g0348	819	PANTHER	CENTROMERE PROTEIN E	2	794	-	-
	Ssu5g0348	819	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	3	366	IPR027417	-
	Ssu5g0348	819	MobiDBLite	consensus disorder prediction	558	580	-	-
	Ssu5g0348	819	Gene3D	Kinesin motor domain	1	366	IPR036961	-
	Ssu5g0348	819	PRINTS	Kinesin heavy chain signature	284	305	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu5g0348	819	PRINTS	Kinesin heavy chain signature	77	98	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu5g0348	819	PRINTS	Kinesin heavy chain signature	192	209	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu5g0348	819	PRINTS	Kinesin heavy chain signature	232	250	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu5g0348	819	Pfam	Kinesin motor domain	11	334	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu5g0348	819	Coils	Coil	350	410	-	-
	Ssu5g0348	819	PANTHER	CENTROMERE PROTEIN E	2	794	-	-
	Ssu5g0348	819	Coils	Coil	527	565	-	-
	Ssu5g0348	819	ProSiteProfiles	Kinesin motor domain profile.	3	334	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu5g0348	819	SMART	kinesin_4	1	342	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0348	Ssu-Chr5	7270062	7277273	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0348	2	396	Miscellaneous Gene Families	AT4G39050	45.387	4.09e-93	313

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0348	K11498		-	gmx:100804944	1397.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g0348	5	7270062	7277273	Ssu5g0348	5	7270062	7277273	ECH