Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0347 ATGTTCTTCCACGAAGGCGAAGCGGTTCGGTCCTCGTGTTTCCCGGTTCTCGAATCCATGTTCACGCCAAGTGAAATAGAGGAGCTCTTTTCCCTCGTTAACGAACCGGCCAGCCCGGGGTCCGGTTCGCATGGTTCGAACCGGGCGGTTCGGTCGACGCACGAGAGAAAGCTTAGGCGAATGCAGTCAAACCGGGAGTCGGCCAGGCGGTCCCGCTGGAGAAAGAAGCGGCATTTAGAGAACCTCACGAACCAAGTGAACCAGTTGAGAATGGAAAACCGAGAACTAAAAAACCGGTTATACTTGACCGTGCACCAGAATCTTCTACTTTCCGTGGAGAACGATCACCTTAGATCCGAATCCGTGGCCCTTATGGCTAGACTCTCGgatctttatcaaattttaggcACCATGATTTCACAATAG 426 0.5047 MFFHEGEAVRSSCFPVLESMFTPSEIEELFSLVNEPASPGSGSHGSNRAVRSTHERKLRRMQSNRESARRSRWRKKRHLENLTNQVNQLRMENRELKNRLYLTVHQNLLLSVENDHLRSESVALMARLSDLYQILGTMISQ 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0347 141 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 59 74 IPR004827 GO:0003700|GO:0006355
Ssu5g0347 141 PANTHER BZIP TRANSCRIPTION FACTOR 44 25 140 - -
Ssu5g0347 141 MobiDBLite consensus disorder prediction 49 68 - -
Ssu5g0347 141 SUPERFAMILY Leucine zipper domain 56 108 IPR046347 GO:0003700|GO:0006355
Ssu5g0347 141 SMART brlzneu 52 116 IPR004827 GO:0003700|GO:0006355
Ssu5g0347 141 MobiDBLite consensus disorder prediction 34 73 - -
Ssu5g0347 141 Pfam bZIP transcription factor 56 100 IPR004827 GO:0003700|GO:0006355
Ssu5g0347 141 CDD bZIP_plant_GBF1 57 100 IPR045314 GO:0003700|GO:0006355
Ssu5g0347 141 PANTHER BZIP TRANSCRIPTION FACTOR 25 140 - -
Ssu5g0347 141 Coils Coil 51 99 - -
Ssu5g0347 141 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 54 100 IPR004827 GO:0003700|GO:0006355
Ssu5g0347 141 Gene3D - 54 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0347 Ssu-Chr5 7249130 7249555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0347 3 135 bZIP Transcription Factor Family AT3G49760 36.364 2.61e-22 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu5g0347 bZIP_1 1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0347 - - gmx:102668006 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0347 5 7249130 7249555 Ssu1g3681 1 92847941 92848369 PCT