Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0341 ATGAAGAAAGGGGAGGTAGCATTGTTCACATTACCCGGAGGTGGTGGTGATGTTTCGCATGACTCTAACTCGGTCGTGCGGTTTGAGGTGGAACTCCTTTCGTGGATCACAGTGGTGGATGTTTGCAAAGATGGTGGAGTTCTCAAGAAGATTATGGAAAAGGGGAGCGGGAATGAGCGCCCTGGTGATCTCGATGAAGTGCTTGTGAAGTATCGGGTGGTGCTTGTTGATGGCACTGTTGTTACTGAGACGCCGGAAGGAGGAGTTGAGTTTCATGTGAAGGATGGTCATCTTTTTCCTATGTTGCCGAAAGTAATCATGACTATGACAAGGGGAGAGAAGGCTGCATTAATTGTCCAACCTCAGTATGCATTTGGGGAGAAGGGGAGAGAAGCTGGCAGTGCGCTTTGTTCAATTCCTCCAATTTCGGTGCTGCATGTTAATATTGAATTGGTGTCCTTTAAGCCTGTCATAAATGTTACTGGTGACTCCAAGGTGCTTAAGAAGATTTTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGGTGCAAATGTTACTGTCAGCTTCACAGCTATGCTAGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGATGAAACACAACCCTTGGAATTCATAACTGATGAGGAACAAGTGATTGCTGGTCTAGACCGAGCTGTGGCAACGATGAAGAAGCATGAGAGGGCCATAATTAGCATGCATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACAAGATCCTGCTGTTGTGCCACCAGGCTCGAATGTAGTCTATGATGTTGAGATGACGGATTTTGTTAagGAGAAAGCGCCATGGGAATTGAATAGTAAGGAGAAAATTGAGGTGGCTGggaggaagaaagaagaaggaaatgtattatttaaaggTGGCAATTATCAGCGAGCAGGGAAGAAGTATGAAAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGAGGATGATGAGCAAAAGCAAGCTAAGGCACTGAGACTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGAAGCAATCAAGCTATGTTCACAGGTGCTAGATGTTGAATTTTGCAATGTGAAAGCTTTGTACAGACGAGCACAAGCACATATGGAAACTGGAGACTTCCTATTGGCAGATGTAGATATCAAGAAAGCTCTTGAGGTGGACCCACAAAACAGGGAGGTAAAGGTAATTCAGAAGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCtatatgaaaacatgtttgcaCGTAAAACAAAGGACTCGTCTATGGCTACAAAGAGATTGAAGATTGAGAAGATGAGAGGGAAAATGAAGCTGTTGCAAGAATGGAAATGGACAAAGTTGCTGATAGCGCAGTGA 1428 0.4237 MKKGEVALFTLPGGGGDVSHDSNSVVRFEVELLSWITVVDVCKDGGVLKKIMEKGSGNERPGDLDEVLVKYRVVLVDGTVVTETPEGGVEFHVKDGHLFPMLPKVIMTMTRGEKAALIVQPQYAFGEKGREAGSALCSIPPISVLHVNIELVSFKPVINVTGDSKVLKKILKEGEGAFTANEGANVTVSFTAMLEDGTVFEKRGIDETQPLEFITDEEQVIAGLDRAVATMKKHERAIISMHPDYAFGNVEVRQDPAVVPPGSNVVYDVEMTDFVKEKAPWELNSKEKIEVAGRKKEEGNVLFKGGNYQRAGKKYEKAADFVSEDGSFEDDEQKQAKALRLSCWLNGAACSLKLNDFPEAIKLCSQVLDVEFCNVKALYRRAQAHMETGDFLLADVDIKKALEVDPQNREVKVIQKKLKQLQADSDKKDAKLYENMFARKTKDSSMATKRLKIEKMRGKMKLLQEWKWTKLLIAQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0341 475 PANTHER PEPTIDYLPROLYL ISOMERASE 274 458 - -
Ssu5g0341 475 Coils Coil 411 431 - -
Ssu5g0341 475 Gene3D Tetratricopeptide repeat domain 278 435 IPR011990 GO:0005515
Ssu5g0341 475 PANTHER PEPTIDYLPROLYL ISOMERASE 1 162 - -
Ssu5g0341 475 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 64 155 IPR001179 GO:0003755
Ssu5g0341 475 SUPERFAMILY TPR-like 286 437 IPR011990 GO:0005515
Ssu5g0341 475 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 274 458 - -
Ssu5g0341 475 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 183 275 IPR001179 GO:0003755
Ssu5g0341 475 Gene3D - 157 277 IPR046357 GO:0003755
Ssu5g0341 475 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 166 271 - -
Ssu5g0341 475 SUPERFAMILY FKBP-like 161 292 - -
Ssu5g0341 475 Gene3D - 36 155 IPR046357 GO:0003755
Ssu5g0341 475 ProSiteProfiles TPR repeat profile. 375 408 IPR019734 GO:0005515
Ssu5g0341 475 SUPERFAMILY FKBP-like 40 155 - -
Ssu5g0341 475 SMART tpr_5 375 408 IPR019734 GO:0005515
Ssu5g0341 475 SMART tpr_5 341 374 IPR019734 GO:0005515
Ssu5g0341 475 SMART tpr_5 292 325 IPR019734 GO:0005515
Ssu5g0341 475 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 60 152 IPR001179 GO:0003755
Ssu5g0341 475 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 179 271 IPR001179 GO:0003755
Ssu5g0341 475 PANTHER PEPTIDYLPROLYL ISOMERASE 166 271 - -
Ssu5g0341 475 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0341 Ssu-Chr5 7094210 7101339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0341 1 439 Calmodulin-binding Proteins AT3G25230 54.484 2.90e-163 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0341 K09571 - gmx:100798382 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0341 5 7094210 7101339 Ssu5g0341 5 7094210 7101339 ECH