Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0340 ATGATTCATACCGTCTCATCATTGGTTATTCTTTACAAGCTGTCTAGTAGTCAGTCAGCATCATCTGATGATATCAATTCTCCATCAACGATGAAGAGATGGATCTATGTTCATTATGTAAGGGCTCATACGCATGATGTCAGGGCCCTGACTGTTGCTGTACTGATAAGTCACGAAGTCCAATCTTCACAATGGATAGATGTTCATTTGCTACAACTAAAAAATGTTCGCACCCCCGGAGGCTTTGCAAAGGCATCTCCGAAGTTAATTTGCAGCACCCCTCAAGAAAAGAGTAAGGCATCTCGGAAGATAATTTGCAGCACCATTTCTAATTCAGGGGTTGTGGATGTTGGGAGGTCAGATTCATCAGAATTAGTGCACATTTTTACACCCCGTAGCGAGTTGCAAGATGAGGAATTACCTCCAACCGAGCCACCCATAACAAGATTGTTTACTAGTTCTGATGGGCAGTGGTTGGCAGCTGTGAACTGCTTTGGggatatatatgtatttaactTGGAGACACAAAGCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGGATTTCCCCCCCATAACAACAATGTACTGATAGTTACAACTTCCTTAAATCAAGTGTATGTATTTGACGTAGAGGCCAAGGAGTTGGGAGAATGGTCAAAGCAGCACACATCTGCTCTTCCTAGGAGATACCAGGCATTTCCTGGTGAAGTTATTGGGCTCTCATTCCCTCTGCCGGAAACTTTATCTTCTCCGTTGGCAACTTCATCTTCGGTGGTTGTTTACAGCTCCAGGGCAACGTGCTTGATTGACTTTGGGTTGCCCATGGCgcaagatgaaaatgatatgcTAAATACTCAAGATTCAAGGACAAggaatttacaaaattttaatgtttag 918 0.4129 MIHTVSSLVILYKLSSSQSASSDDINSPSTMKRWIYVHYVRAHTHDVRALTVAVLISHEVQSSQWIDVHLLQLKNVRTPGGFAKASPKLICSTPQEKSKASRKIICSTISNSGVVDVGRSDSSELVHIFTPRSELQDEELPPTEPPITRLFTSSDGQWLAAVNCFGDIYVFNLETQSQHWFISRLDGASVTAGGFPPHNNNVLIVTTSLNQVYVFDVEAKELGEWSKQHTSALPRRYQAFPGEVIGLSFPLPETLSSPLATSSSVVVYSSRATCLIDFGLPMAQDENDMLNTQDSRTRNLQNFNV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0340 305 Gene3D - 7 249 IPR015943 GO:0005515
Ssu5g0340 305 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 114 302 IPR044622 GO:0010073|GO:0035266
Ssu5g0340 305 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 9 59 IPR044622 GO:0010073|GO:0035266
Ssu5g0340 305 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 60 114 IPR044622 GO:0010073|GO:0035266
Ssu5g0340 305 SUPERFAMILY WD40 repeat-like 86 250 IPR036322 GO:0005515
Ssu5g0340 305 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 114 302 - -
Ssu5g0340 305 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 9 59 - -
Ssu5g0340 305 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 60 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0340 Ssu-Chr5 7083562 7087595 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0340 K14548 - gmx:100776641 333.183