Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0075 ATGGACCGACGCTGGCCATGGAAGAAAAAATCGTCGGACAAGGCCGTGCTTGAGAAAGCAGCTGCGGAATTGGACTCTGCGGGTGCTTCCACTCAGGGTAATCAGAAGCCAAGCTACGTCCAAATCTCTGTGGAGTCATATTCCCATCTGACTGGTTTGGAGGATCAAGTGAAGACATATGAAGAAAAAGTTCAGACACTGGAAGATGAGATCAaggaattaaatgaaaaattgtcAGCAGCTAATTCAGAGATAAATACCAAGGAAAGCTTGGTAAAACAGCATGCTAAAGTAGCAGAAGAGGCTGTCTCAGGCTGGGAAAAGGCTGAAGCAGAAGCCTTGGCATTGAAGAACCATCTGGAATCTGTCACTCTCTCAAAACTCACTGCTGAGGACCAGGCATCACAGTTAGATGGTGCTCTTAAAGAGTGTATGCGACAGATAAGAAACCTGAAGGAAGAACATGAACAGAAAATACAGGAAGTTGCTCTCACAAAAACCAAGCAATTGGACAAGATTAAGGGTGAGTTTGAGGCTAAGATAGTGAACTTTGAACAGGAACTCCTCATGTCTGCTGCCGACAATGCAGCTTTGTCAAGGTCCTTGCAAGAGCGCTCTAACATGCTAATCAAATTAAGTGAAGAAAAAGCTCATGCTGAGGCTGAAATTGAGCTTCTTAAGGGCAACATCGAATCATGCAAAAGAGAAATCAATTCACTCAAATATGAGCTTCATGTTATTTCCAAGGAGCTTGAGATTCGCAATGAAGAAAAGAACATGAGTATGAGGTCCGCAGAAGCTGCAAACAAGCAGCACATGGAGggtgttaaaaaaattgctaaattaGAGGCAGAGTGCCAAAGATTACGTGGTCTAGTGCGGAAAAAGTTACCTGGTCCTGCTGCACTTGCACAAATGAAGCTAGAAGTTGAAAGTCTTGGCCGAGAATATGGAGAAACTCGATTAAGGAAGTCTCCTGTCAAACCTGCCAGTTCTCACCTGTCCCCATTGCCTGGGTTCTCCCTAGATAATGCACAGAAATTCCACAAAGATAATGAATTTCTTACAGAGCGTTTGTtggcaatggaagaagaaacaaAGATGCTGAAAGAAGCTTTGGCAAAACGCAACAGTGAATTGCAGGCTTCAAGGAGTATGTGTGCTAAAACTTTGAGCAAACTTCAAATTTTGGAAGCACAAGTTCAGACAAGTCATCAGCAGAAGGGATCTCCTAAATCCATCATCCATGTAAACCATGAAAGCAATGCACCAAGCTTGATCTCCATGTCTGAAGATGGAATTGATGATGTGGGAAGTTGTGCTGAGTCTTGGTCCATAGCAATTCTCCCTGAGCTGTCCCAATTCCCTAAAGAAAAGAATACTGAGGAATTCAGCAAATCTGATGCCAGTAAGAAGTTGGAACTAATGGATGACTTTCTGGAGGTGGAGAAATTGGCTCGATTATCAAATGATTCCAGTGGAGTTTCAGTTacttcaaacaatataacaaatgAAACTGTAACCAATGATGTATCAGAAGTCAGTACTGGGAAAGATGTTCCCTCTAACTCCAAAGAGAATAGTGATCCAAATCCATTGCCAAGTGAGGAGTCTTCTGCTGAGGAATTGTCAGCACCTGATCCCCAATCTGATGTTCCTGGCTTGTCGCTAGCAGAGCTTCGATCAAGAATATTATCAGTTTTCGAGTCCATGGCTAAGGATGCTGATATGGGGAAGATCCTGAAGGATATTAAACACGTTCTTGAAGATGCATGGGACACTTCCATCCAGGACTCTGTATCTGCCATTCCCCATGATGTCAAGCCTTCTGATACTACATGTGATAAGCAGGGTAGTACTGAAGATGCTGGCTTAAATGCAGAAAGAGAAATGATTTCATCCCAGCAACCTACAGAATATGTGCAGATAACTTCGGATTTAGAAGCCGCAATTTCACAAATTCATGACTTTGTATTGTTCCTAGCCAAAGAAGCAATGGCAGCACATCATATATCTTCTGATGGAGATGGAATAAGCCAAAAGATGCAGGAGTTCTCTGTCACTTTTAATAAAGTTACATCCAATGAAGCAAGTTTGCTACAGTTTGTTCTAGACCTGTCTAATGTTCTATCCAAAGCAAGTGAATTCAGATTTAATATCCTTGGTTACAAGGGTACGGAAGCTGAAAGTAACAGTCCTGATTGCATAGATAAGATTGCTCTGCCAGAAAATAAGTTAGTTCAAGAGAATTCATCAGGAGAGAGATATCAAAATGGTCATTCCCATATTCTTAATCCCTGTTCTGATCCTGAGGTTCCTGATGATGGAAATTTGGCCTCAGGCTATGAATCAAATGGCACACCACAGAAGTTCTCAGTGGAGGactttgaagaattgaaattagagaaagagaaggcaGTCGCTGATCTGTCAAAATGTACTGAAAATCTTGAAATGACAAAGTCTCGGTTACTAGAGACAGAGCAACATCTAGCTGAAGTTAAATCACAATTGGCTTCTGCTCAAAGATCAAACAGCCTGGCTGAGACGCAACTAAAATGTATGACAGAATCGTACAGGTCAATTGAAACACGTGCAAAGGAATTTGAAACTGAGCTTAATCATCTGCGAATGAAGACAGAAACTCTGGAGAATGAACTTGAAGATGAAATGAGGGCTCATGAAGCAGCTTTGGCTAAGTACAGGGAGCTAGAAGAACAATTACAAAGGAATGAGAGCTCAGCTGCTGATAATGACATTAAGACTAAGCAGGTAAAGCTGAGAGAGACTTGTACAGCTGCTGCTGAAAAGTTAGCTGAGTGTCAGGAAACCATATTTCTTCTTGGCAAGCAGTTAAAAGCTCTGCATCCTCAAACAGAACCAATGGGATCTCCTTATTCAAAGGCTGAAGGCTTCACAGAGCGTGAACCTACCACTAATAGCCCAAATTTGCAAGATCAGGCAGAGATGGACAGTGCTACTTCTGCATTTGTGCAAAGACTGGGTGGGGAGTCCCCCTTACATTTTGCTAACAGTTTATATAGTCCACCAGATAATGAGTCCAACTTTCCAGCCATATCTCCTGTACAGAATCCAAACCACAGGCCTATGAAGTCAACctcttcttcagcttcttccaCTCCTACACCAGAGAAACATCCCCGAGGTTTTAGTAGATTCTTTTCATCAAAAGGAAAAAACGGTCATTGA 3210 0.4065 MDRRWPWKKKSSDKAVLEKAAAELDSAGASTQGNQKPSYVQISVESYSHLTGLEDQVKTYEEKVQTLEDEIKELNEKLSAANSEINTKESLVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDQASQLDGALKECMRQIRNLKEEHEQKIQEVALTKTKQLDKIKGEFEAKIVNFEQELLMSAADNAALSRSLQERSNMLIKLSEEKAHAEAEIELLKGNIESCKREINSLKYELHVISKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGREYGETRLRKSPVKPASSHLSPLPGFSLDNAQKFHKDNEFLTERLLAMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQILEAQVQTSHQQKGSPKSIIHVNHESNAPSLISMSEDGIDDVGSCAESWSIAILPELSQFPKEKNTEEFSKSDASKKLELMDDFLEVEKLARLSNDSSGVSVTSNNITNETVTNDVSEVSTGKDVPSNSKENSDPNPLPSEESSAEELSAPDPQSDVPGLSLAELRSRILSVFESMAKDADMGKILKDIKHVLEDAWDTSIQDSVSAIPHDVKPSDTTCDKQGSTEDAGLNAEREMISSQQPTEYVQITSDLEAAISQIHDFVLFLAKEAMAAHHISSDGDGISQKMQEFSVTFNKVTSNEASLLQFVLDLSNVLSKASEFRFNILGYKGTEAESNSPDCIDKIALPENKLVQENSSGERYQNGHSHILNPCSDPEVPDDGNLASGYESNGTPQKFSVEDFEELKLEKEKAVADLSKCTENLEMTKSRLLETEQHLAEVKSQLASAQRSNSLAETQLKCMTESYRSIETRAKEFETELNHLRMKTETLENELEDEMRAHEAALAKYRELEEQLQRNESSAADNDIKTKQVKLRETCTAAAEKLAECQETIFLLGKQLKALHPQTEPMGSPYSKAEGFTEREPTTNSPNLQDQAEMDSATSAFVQRLGGESPLHFANSLYSPPDNESNFPAISPVQNPNHRPMKSTSSSASSTPTPEKHPRGFSRFFSSKGKNGH 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0075 1069 MobiDBLite consensus disorder prediction 957 988 - -
Ssu5g0075 1069 Coils Coil 796 914 - -
Ssu5g0075 1069 MobiDBLite consensus disorder prediction 1012 1052 - -
Ssu5g0075 1069 Coils Coil 50 91 - -
Ssu5g0075 1069 Coils Coil 345 372 - -
Ssu5g0075 1069 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 1069 - -
Ssu5g0075 1069 Coils Coil 202 243 - -
Ssu5g0075 1069 Coils Coil 134 168 - -
Ssu5g0075 1069 MobiDBLite consensus disorder prediction 973 988 - -
Ssu5g0075 1069 MobiDBLite consensus disorder prediction 490 554 - -
Ssu5g0075 1069 MobiDBLite consensus disorder prediction 1008 1069 - -
Ssu5g0075 1069 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1069 - -
Ssu5g0075 1069 Pfam Filament-like plant protein, long coiled-coil 88 962 IPR008587 -
Ssu5g0075 1069 MobiDBLite consensus disorder prediction 490 545 - -
Ssu5g0075 1069 MobiDBLite consensus disorder prediction 603 622 - -
Ssu5g0075 1069 SUPERFAMILY Tropomyosin 796 959 - -
Ssu5g0075 1069 Coils Coil 248 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0075 Ssu-Chr5 1475159 1479560 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0075 5 1475159 1479560 Ssu5g0075 5 1475159 1479560 ECH
Ssu5g0075 5 1475159 1479560 Ssu1g3964 1 98101196 98105603 PCT