Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3720 ATGGTGGAAGCCGCAATTTCCACGCCCAAAAAAGCCCGAGAAGTCGCGTCTCGTTACACGTCATCGTCATCATCTTCTTGGTCACCTTCGTCATTGACGTCCAGACGGTCACAGTCGGTGGAGCGGAGACGACCCGGCACTAGTGGCACCACTGGAACGGCAGCGTCGTCTGGGAAGGTGCTTTTGAGTTCGACAACAACGAGGAGCCTGTCGGTGTCGTTCCAGGGCGAGTCATTCTGGGTCACCGTGAACAAAGCCAAACCGACGAACGTTGTTCCTGCTCCTAAACTAGTCGTGCCGAGAAAGTCCGTGTTGGATCACAGTGCATCATCTCCGCGAGGAGTTTTAAATAGCAGAGGCCAAGTTTCTTTCATTCGTCCTGCTTCGCCTAACAAGGTTTCTACAGTACCATCATCCTCTTCCAGAGGCGTGAGCCCCTCGAGGCTCAGAAACGGAGCGTCCCCGAACGGTttcagcagcagcagcagcaatgAGCCTTCTATTTTGAGTTTTGTCGTTGACGTGAAGAGAGGGAGGGTGGGAGAGAACCGAATTGTGGAGGCACATTCGCTGAGGCTTCTCTATAACCGCCTCTTGCAATGGCGTTTTGTGAATGCCAGAGCAGATGCTGACCTCTCTCTACAGAAATCCAATGCTGAGAATTGTCTCTATGATGCTTGGGCATCTACCACTAAACTTCGGGAATCTGTGAGTGCCAAAAGGAGAGGATTACAATTGCTGAAGCATAAGTTGAAGCTGACTTCCATCCTCAAGGAGCAAATGATATATTTGGAAGATTGGGCTATTTTGGATCCAGTGTACACAAGTTCGCTTTCGGGAGCTATTGAAGCACTAAAGGCTAGCACTCTCCGCCTTCCTGTTGTTGATGGGGCCAagGCAGATGTACTGAAAGTGAAAGATGCTGTTTGTTCAGCGGTGGATGTAATGAAGGCTATGGCATCCTCCATATGCTTATTGTTACCAAAGGTTGGACATGTAAATTCGTTGGTGGTTGAAGTTGCTAACTTGAGTGGAAAGGAGCATGCTTTGCTTGATGAGTGCAGAGACCTTTTCTCAATGATTACAGCCATGCAGGTTATTAACAAAATCTTTACACGAGCAGGTATGATGTTGCGTGCTGATAGGTGTGCTTATTTTGACCTTGCATTCAATACGTATGATGATTGGTCATATGCAAAGAGTCAGGACTGGAAGTTGATgttttaa 1227 0.4711 MVEAAISTPKKAREVASRYTSSSSSSWSPSSLTSRRSQSVERRRPGTSGTTGTAASSGKVLLSSTTTRSLSVSFQGESFWVTVNKAKPTNVVPAPKLVVPRKSVLDHSASSPRGVLNSRGQVSFIRPASPNKVSTVPSSSSRGVSPSRLRNGASPNGFSSSSSNEPSILSFVVDVKRGRVGENRIVEAHSLRLLYNRLLQWRFVNARADADLSLQKSNAENCLYDAWASTTKLRESVSAKRRGLQLLKHKLKLTSILKEQMIYLEDWAILDPVYTSSLSGAIEALKASTLRLPVVDGAKADVLKVKDAVCSAVDVMKAMASSICLLLPKVGHVNSLVVEVANLSGKEHALLDECRDLFSMITAMQVINKIFTRAGMMLRADRCAYFDLAFNTYDDWSYAKSQDWKLMF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3720 408 MobiDBLite consensus disorder prediction 110 164 - -
Ssu1g3720 408 PANTHER AUGMIN FAMILY MEMBER 5 89 - -
Ssu1g3720 408 PANTHER AUGMIN FAMILY MEMBER 93 366 - -
Ssu1g3720 408 MobiDBLite consensus disorder prediction 43 61 - -
Ssu1g3720 408 MobiDBLite consensus disorder prediction 14 36 - -
Ssu1g3720 408 MobiDBLite consensus disorder prediction 105 164 - -
Ssu1g3720 408 Pfam QWRF family 30 352 IPR007573 -
Ssu1g3720 408 PANTHER QWRF MOTIF-CONTAINING PROTEIN 9 93 366 - -
Ssu1g3720 408 PANTHER QWRF MOTIF-CONTAINING PROTEIN 9 5 89 - -
Ssu1g3720 408 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3720 Ssu-Chr1 93525526 93529508 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3720 - - gmx:100797671 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3720 1 93525526 93529508 Ssu1g3720 1 93525526 93529508 ECH
Ssu5g0312 5 6602808 6608806 Ssu1g3720 1 93525526 93529508 PCT