Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3708 ATGGGAACAGATATTCCGGCGAATTACGCGAACATGTTGAGCACGGTCACCGACGACACCTCCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGGCGAGTTCCCGGCGGCGCCTTCCGAGAGCCGCCGCCTCCTGATCGCGTGCGCCTCCGAGAATTCCGACGACTTCATTCGGCAACTGGTTCTCAACCTCGACTCCTGTTCCATTGAGGAGCAAAAACAAGCCACCATGGAAATTAGGTTACTCGCGAAGAACAAGCAAGAGAACCGCATCAAAATCGCGAAAGCCGGGGCCATTAAGCCCTTGATTTCGCTCATCTCGTCGCCGTCGTCGGACCTTCAGCTTCAGGAATACGCGGTCACCGCGATTCTGAATCTCTCCCTCTGCGACGAGAACAAAGAGCTCATCAATTCCTCGGGAGCGGTGAGGCCCCTGGTCGGGGCGCTGGAGACGGGGACGGCGACGGCGAGGGAGAACGCGGCGTGCGCGTTGCTCCGTCTCTCGGCGACGGAGGAGAGCAAGGCGGCGATAGGGAGGGCGGGGGCGATTCCGGCGCTGGTGAAGCTTCTAGAAGGCGGGGGACTGCGCGGGAAGAAGGACGCGGCGACGGCGCTGTACGCGCTGTGCTCGGCGAAGGAGAACAAGGTGAGGGCGGTGAGGGCCGGGGCGATGAGGGCGCTGGTGGAGCTGATGGCGGACTTGGGGTCGAGCATGGTGGACAAGGCGGCGTACGTGGTGAGCGTGGTGGTGAGCATGGCGGAGGCGAGGGCGGCGCTGGTGGAGGAGGGGGGGATTGCGGTGCTGGTGGAGATTGTGGAGGTGGGGACGCAGAGGCAGAAGGAGATTGCGGTTGGGGTTTTGTTGCAGATTTGCGAGGAGAGTGTGTTGTACCGTACCATGGTGTCCCGCGAAGGAGCCATTCCTCCCTTGGTTGCTTTGTCGCAGTCACAATCCAATCGCGCCAAACAAAAGGCTGAGAAACTGATAGAGCTTCTACGGCAACCAAGATCCGGCAATGCCGCAGCCCGTACCTCAGTAATGTCAGCATAA 1053 0.6087 MGTDIPANYANMLSTVTDDTSSAFSDCNSDRSGEFPAAPSESRRLLIACASENSDDFIRQLVLNLDSCSIEEQKQATMEIRLLAKNKQENRIKIAKAGAIKPLISLISSPSSDLQLQEYAVTAILNLSLCDENKELINSSGAVRPLVGALETGTATARENAACALLRLSATEESKAAIGRAGAIPALVKLLEGGGLRGKKDAATALYALCSAKENKVRAVRAGAMRALVELMADLGSSMVDKAAYVVSVVVSMAEARAALVEEGGIAVLVEIVEVGTQRQKEIAVGVLLQICEESVLYRTMVSREGAIPPLVALSQSQSNRAKQKAEKLIELLRQPRSGNAAARTSVMSA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3708 350 SMART arm_5 212 252 IPR000225 GO:0005515
Ssu1g3708 350 SMART arm_5 130 170 IPR000225 GO:0005515
Ssu1g3708 350 SMART arm_5 171 211 IPR000225 GO:0005515
Ssu1g3708 350 SMART arm_5 253 293 IPR000225 GO:0005515
Ssu1g3708 350 SMART arm_5 87 129 IPR000225 GO:0005515
Ssu1g3708 350 Pfam Armadillo/beta-catenin-like repeat 172 210 IPR000225 GO:0005515
Ssu1g3708 350 Pfam Armadillo/beta-catenin-like repeat 131 169 IPR000225 GO:0005515
Ssu1g3708 350 Pfam Armadillo/beta-catenin-like repeat 88 128 IPR000225 GO:0005515
Ssu1g3708 350 PANTHER U BOX DOMAIN-CONTAINING 9 343 - -
Ssu1g3708 350 Gene3D - 198 339 IPR011989 -
Ssu1g3708 350 Gene3D - 28 197 IPR011989 -
Ssu1g3708 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 182 224 IPR000225 GO:0005515
Ssu1g3708 350 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 9 343 - -
Ssu1g3708 350 SUPERFAMILY ARM repeat 54 333 IPR016024 -
Ssu1g3708 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 98 142 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3708 Ssu-Chr1 93388840 93392468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3708 22 342 U-box Gene Family AT2G23140 46.526 1.82e-81 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3708 - - mnt:21388741 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0322 5 6818073 6820135 Ssu1g3708 1 93388840 93392468 PCT