Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3681 ATGTTCTTCCACGAAGCGGTCCAGTTCCCATGCTCTCCGGTTCACGGAACCATGCTGACCGAAAGCGACATAGGAGACCTGTTTTCTCTCATTAACCAATCGAGGGACCCGGCCAGCCCAGGGTCCGGTTCACAGGGATCGAACCGGGCGGTTTACTCGCCAGAGGAAAGAAAGCTGAGACGCATGCAATCGAACCGGGAATCGGCCCGAAGGTCCCGCTATAGAAAGAAGAAGCATCAAGAGAACCTCACGAGCCAACTGAACCGGTTGAGAATCCAAAACCGGGAACTGAAAACCCAACTTGCCTCCACCATGCACCACCATCTCCTACTATCCCTACATAATGATCATCTTATATCCGAATCCGTTGCCCTCATGGCCACACTTTCGGATCTATGTGGGATTTTAAGCACCATGCTTTCACAATAA 429 0.5152 MFFHEAVQFPCSPVHGTMLTESDIGDLFSLINQSRDPASPGSGSQGSNRAVYSPEERKLRRMQSNRESARRSRYRKKKHQENLTSQLNRLRIQNRELKTQLASTMHHHLLLSLHNDHLISESVALMATLSDLCGILSTMLSQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3681 142 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Ssu1g3681 142 Coils Coil 80 100 - -
Ssu1g3681 142 PANTHER BZIP TRANSCRIPTION FACTOR 44 19 141 - -
Ssu1g3681 142 SMART brlzneu 53 124 IPR004827 GO:0003700|GO:0006355
Ssu1g3681 142 MobiDBLite consensus disorder prediction 32 83 - -
Ssu1g3681 142 MobiDBLite consensus disorder prediction 32 51 - -
Ssu1g3681 142 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 102 IPR004827 GO:0003700|GO:0006355
Ssu1g3681 142 Pfam bZIP transcription factor 55 103 IPR004827 GO:0003700|GO:0006355
Ssu1g3681 142 SUPERFAMILY Leucine zipper domain 57 111 IPR046347 GO:0003700|GO:0006355
Ssu1g3681 142 MobiDBLite consensus disorder prediction 53 69 - -
Ssu1g3681 142 Gene3D - 55 108 - -
Ssu1g3681 142 CDD bZIP_plant_GBF1 58 105 IPR045314 GO:0003700|GO:0006355
Ssu1g3681 142 PANTHER BZIP TRANSCRIPTION FACTOR 19 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3681 Ssu-Chr1 92847941 92848369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3681 13 136 bZIP Transcription Factor Family AT3G49760 38.931 8.53e-20 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g3681 bZIP_1 4.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3681 - - gmx:102661984 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0347 5 7249130 7249555 Ssu1g3681 1 92847941 92848369 PCT