Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3677 ATGACGGGGATGAATGAGAGCAACACCGATGATGGAAACAACCATAACTGGTTGGGTTTCTCTCTCTCACCCCACATGAAAATGGAGGTTACTTCTGCCGCTGTTTCCAACACCACTGTTCCGACAACCTTCTACATGTCCCCTTCTCACATGTCCAACTCCGGAATGTGTTACGGTGTTGGGGAAAATGGTAACTTCCATTCTCCTCTTACCGTAATGCCTCTCAAGTCAGATGGGTCACTTTGTATCTTGGAAGCTCTCAATAGATCACAAACGCAAGTGATGATGCCAACTTCGTCTCCCAAATTGGAGGACTTTCTAGGTGGTGCAACTATGGGAACTCACGAATATGGAAGCCACGAGAGAGGGGCAAATGCAATGGCTCTGAGCCTAGACAGCATCTATTATAGCACCCAAAATGCAGAGGTTCAACCCAACAGAGACATTCTTTCAGAACCCTTCAGGCAACAGGGGCATATAAATGTCCAAACGCACCCTTATTACTCAGGACTTGCTTGCCATGGCTTATATCAAGCACCGTTAGAGGAAGAAACAAAGGCAACGCACGCTTCAGTTTGCAGCTCCCTAATGCCTCAAATGACAGATGAAGGTTTGAAAAACTGGGTGCCCCCAAGGGAGTATTCAACTCATCAGCAGGGTCTGGAGCAACAAATGAACTGTGGCACAAGTCGTGGAACTGTGGGGTGTGGGGAGTTACAGTCACTGAGTTTATCTATGAGTCCCGGTTCTCAGTCTAGTTGTGTCACTGCTCCTTCTGGGACAGATTCTGTGGCTGTGGATGCAAAAAAAAGAGGGCATGGTAAGTTGGGTCAGAAGCAGCCAGTGCACAGGAAATCTATTGACACATTTGGGCAGAGAACGTCGCAGTATAGAGGCGTCACAAGGCATAGATGGACTGGGAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGTATATTTGGGGGGTTACGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTCCGATAGAAAATTACCAAGTTGAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAATACGTTGCACACTTGAGAAGAAAAAGCAGCGGATTTTCAAGGGGTGCTTCAATATACCGAGGGGTCACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAAGCAGCGGAAGCATACGATGTAGCTGCAATCAAATTCCGCGGCGCAAATGCAGTCACAAACTTTGACATTTCAAGATACGATGTTGAGAAAATCATGGCCAGTAGTAATCTTCTAGCTGGGGAGCTTGCTAGGCGAAACAAAGATAATGATCCAAGGAACGAGGCCATCGAGTATAATAGGGGTGTGGTAACAAGTCAGGGCAATAATGAGGGAATAGTTCAAGcaagaaacaacaatgaaaacGAGTCAGGGTGGAAAATGGTTTTGTTTAATCACCCGCCACAGCAGCAACAGTCAAATGGCAGTGACCAAAAAATAATGCACTGCGGAAATTATAGAAACGGTGCATTCTCTGTGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGGTTCTGGGCAGCCCATGCTGGACGAGTCTAGCAAGATTGGGACTCATTTTTCAAACCCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGATAAAACGGGTCCCTCGCTTCTGTTTCCGAAGACCCCAGTGGAAACAAAGATTGTGAACCCCATTAGTACCAGTGTTACTTCTTGGTTACCCTCACCAACGGTTCAAATGAGGCCTCCTCCTGCTATTACTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACCGATACTTGA 1971 0.4663 MTGMNESNTDDGNNHNWLGFSLSPHMKMEVTSAAVSNTTVPTTFYMSPSHMSNSGMCYGVGENGNFHSPLTVMPLKSDGSLCILEALNRSQTQVMMPTSSPKLEDFLGGATMGTHEYGSHERGANAMALSLDSIYYSTQNAEVQPNRDILSEPFRQQGHINVQTHPYYSGLACHGLYQAPLEEETKATHASVCSSLMPQMTDEGLKNWVPPREYSTHQQGLEQQMNCGTSRGTVGCGELQSLSLSMSPGSQSSCVTAPSGTDSVAVDAKKRGHGKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPIENYQVELEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVEKIMASSNLLAGELARRNKDNDPRNEAIEYNRGVVTSQGNNEGIVQARNNNENESGWKMVLFNHPPQQQQSNGSDQKIMHCGNYRNGAFSVALQDLIGIDSVGSGQPMLDESSKIGTHFSNPSSLVTSLSSSREASPDKTGPSLLFPKTPVETKIVNPISTSVTSWLPSPTVQMRPPPAITLSHLPVFAAWTDT 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3677 656 ProSiteProfiles AP2/ERF domain profile. 296 362 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 Pfam AP2 domain 398 448 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 Pfam AP2 domain 296 354 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 ProSiteProfiles AP2/ERF domain profile. 398 456 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 SUPERFAMILY DNA-binding domain 397 458 IPR016177 GO:0003677
Ssu1g3677 656 CDD AP2 397 458 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 CDD AP2 295 363 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 Gene3D AP2/ERF domain 295 364 IPR036955 GO:0003700|GO:0006355
Ssu1g3677 656 Gene3D AP2/ERF domain 398 458 IPR036955 GO:0003700|GO:0006355
Ssu1g3677 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 654 - -
Ssu1g3677 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 654 - -
Ssu1g3677 656 SUPERFAMILY DNA-binding domain 295 364 IPR016177 GO:0003677
Ssu1g3677 656 MobiDBLite consensus disorder prediction 577 608 - -
Ssu1g3677 656 SMART rav1_2 296 368 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 SMART rav1_2 398 462 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 MobiDBLite consensus disorder prediction 577 600 - -
Ssu1g3677 656 PRINTS Ethylene responsive element binding protein signature 438 458 IPR001471 GO:0003700|GO:0006355
Ssu1g3677 656 PRINTS Ethylene responsive element binding protein signature 297 308 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3677 Ssu-Chr1 92724326 92727708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3677 10 482 AP2-EREBP Transcription Factor Family AT4G37750 54.876 4.87e-164 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Ssu1g3677 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3677 K09285 - gmx:100787223 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3677 1 92724326 92727708 Ssu1g3677 1 92724326 92727708 ECH
Ssu5g0356 5 7557595 7561309 Ssu1g3677 1 92724326 92727708 PCT