Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3674 ATGGAGAATGACCATGGATTCTCTATTACTGCAGATTGTGTGGAGAAAATTGATGCCCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACACACGCGACTCTCTTATCCGCTGGAGAAGTTTCGCTCAGATGTTGCTGGCAGAAGCTTTCACAACGGACGTTTTATTCAGAGGATGAGAGAGAAGGCTGCTTCCTTTCCCAATGTACGATTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAGAAGGGGATAATTAAAGGTGTCTACTACAAAACGAAGGATAGTCAGGAATTATCAGCTTGTGCACCCCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGTTCTCTTTGTAATTCTAAGGTAGATGTTCCCTCTTGTTTCGTTGGCTTAGTTTTGGAGAATTGTGAACTTCCTTGTGCAAATCATGGCCACGTCATACTGGGAGATCCTTCGCCAGTTCTGTTCTATCCTATAAGTAGTACAGAAGTCCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCCAATGGTGAAATGGCAAATTATTTGAAGACAGTGATAGCTCCACAGATTCCTCCGGAGCTTCATGACGCGTTCATAGCTGCAGTGGACAAAGGCAACATCAGGACAATGCCAAATAGAAGCATGCCAGCAGCTCCTTATCCTACTCCCGGAGCCCTGCTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACGGGGGGTGGAATGACTGTGGCATTATCAGATATAGTAGTGCTGCGAAATCTTCTCAGGCCTTTGCGTGACCTGAATGATGCACCCAGCCTTTGCAAATACCTTGAATCCTTCTATACCTTGCGGAAGCCTGTGGCATCCACTATAAATACGTTGGCAGGAGCCCTTTACAAGGTTTTTTGCGCATCACCTGATCCAGCGAGGAAGGAAATGCGCCAAGCTTGCTTCGATTATCTTAGTCTTGGAGGTCTGTTCTCGAAGGGGCCTGTCTCTTTGCTTTCAGGATTAAACCCTCGGCCCTTGAGGCTGGTCCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTACTGCTACCATTTCCTTCACCTCAACGTATATGGATTGGAGTCCGATTAATTTCTAGTGCATCTGGAATCATCTTGCCAATAATTAAGGCAGAAGGGGTCCGTCAGATGTTCTTACCTGCAACTGTTCCAGCTTACTACCGAAATCCCCCGGCTGCATAA 1257 0.4614 MENDHGFSITADCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFRSDVAGRSFHNGRFIQRMREKAASFPNVRLEQGTVTSLLEEKGIIKGVYYKTKDSQELSACAPLTIVCDGCFSNLRRSLCNSKVDVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEVRCLVDVPGQKVPSISNGEMANYLKTVIAPQIPPELHDAFIAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPSLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSKGPVSLLSGLNPRPLRLVLHFFAVAIYGVGRLLLPFPSPQRIWIGVRLISSASGIILPIIKAEGVRQMFLPATVPAYYRNPPAA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3674 418 Gene3D - 12 308 IPR036188 -
Ssu1g3674 418 SUPERFAMILY FAD/NAD(P)-binding domain 13 329 IPR036188 -
Ssu1g3674 418 PANTHER SQUALENE MONOOXYGENASE 11 417 IPR040125 GO:0004506|GO:0016126
Ssu1g3674 418 Pfam Squalene epoxidase 105 377 IPR013698 GO:0004506|GO:0016021|GO:0050660
Ssu1g3674 418 PANTHER SQUALENE MONOOXYGENASE-RELATED 11 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3674 Ssu-Chr1 92608410 92610688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3674 12 416 Miscellaneous Gene Families AT1G58440 80.988 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3674 K00511 - gmx:100820031 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3674 1 92608410 92610688 Ssu1g3674 1 92608410 92610688 ECH
Ssu5g0363 5 7670412 7674806 Ssu1g3674 1 92608410 92610688 PCT