Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3669 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCAGAAGAAGACGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGTGGCAACTGGATCGCTTTGCCGCAAAAGATCGGCCTTAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACCTCAAACACGGTGGTTTCTCTGAAGAAGAAGACAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTACTGGAACACAAGGCTGAAGAAGAAGCTTCTAGGGAAGCACCGTAAGGAACAACAGGCACGAAATAAAGGAAACGGTGTCGTTAAGCAGGTTAACAGTTCCTCACCCTTGCTTCAGGAAAACAGTTCTCAACAGCAACCCTATTGGCCACAGATTCCTGTGTTGCCGTACACAAACCAAAGTCCAGGTTTCAACGACCAAGACTCCATAAGAAAACTTCTAATGAAACTCGGAGGGAGATTCTCCGATGATTATCAACCCGCCCTTGACGGGTTGTGTCTTCAGTTCCCACACGGTTCTCTCTCATCAATACAACAAATTCAAGAGGAGCAAGTCCATGTGGGTTCTTCTGGGTGCGTGAACTCtgttggcaacaaccaagtgcTATTTGGGGAGAGTAACGAGTACTGCGCTGAGTTGGTGCAAGGACAAGGCAGTTTCGCTACCGCAGCAATTGGGGAAACGGTTTCTAGCAATGATTATTCTCAAAGGTTATTAGGTGGGTTGGAGTTCTTCTATGGGGAGGAAATGATCACCGATAGGATAATGGGTGCTTCTTCAAGTTGTTGGCAAAGCACTAATTGGGGTGAGACCAGTTCTCTGATGTATCCTCCTCTTGTTGCTTCGAATTACGAGGGTGTAAGGCAAGAGATGCCACGAGAATGTGCTTTTCAAGACTTGAGCTACCCGGGGCCGCAATAG 1023 0.4702 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARNKGNGVVKQVNSSSPLLQENSSQQQPYWPQIPVLPYTNQSPGFNDQDSIRKLLMKLGGRFSDDYQPALDGLCLQFPHGSLSSIQQIQEEQVHVGSSGCVNSVGNNQVLFGESNEYCAELVQGQGSFATAAIGETVSSNDYSQRLLGGLEFFYGEEMITDRIMGASSSCWQSTNWGETSSLMYPPLVASNYEGVRQEMPRECAFQDLSYPGPQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3669 340 MobiDBLite consensus disorder prediction 119 149 - -
Ssu1g3669 340 CDD SANT 71 113 IPR001005 -
Ssu1g3669 340 PANTHER OS09G0431300 PROTEIN 1 329 - -
Ssu1g3669 340 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 329 - -
Ssu1g3669 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu1g3669 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu1g3669 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ssu1g3669 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu1g3669 340 SMART sant 13 64 IPR001005 -
Ssu1g3669 340 SMART sant 67 115 IPR001005 -
Ssu1g3669 340 CDD SANT 16 62 IPR001005 -
Ssu1g3669 340 Gene3D - 7 68 - -
Ssu1g3669 340 Gene3D - 70 140 - -
Ssu1g3669 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu1g3669 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu1g3669 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ssu1g3669 340 MobiDBLite consensus disorder prediction 130 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3669 Ssu-Chr1 92486801 92488140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3669 1 280 MYB Transcription Factor Family AT3G49690 49.841 1.97e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g3669 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3669 K09422 - gmx:778079 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3669 1 92486801 92488140 Ssu1g3669 1 92486801 92488140 ECH
Ssu5g0368 5 7757456 7759166 Ssu1g3669 1 92486801 92488140 PCT