Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02105 ATGGAGGTTCGGAATTGTAATGGTTGCAGATCCTGGGTGGAGGACATTTACTGGTCCCATTTTCAATTTCTCCATTTCGCGCAGTTTCTCCGTGCAGATTATGATCAACACCTTGCACTTCCGAAGACATTTTCAGACAATTTAAAGAAGAAGCTGCCTGAAAATGTGACCCTTAAGGGTCCTAGTGGTGTTGCATGGAATATTGCGATGACTACTAGAGATGATACAATGTACCTTGCACATGGTTGGCAACAGTTTGTGAAAGATCACTGTCTGAAGGAGAATGATTTCCTGGTCTTTAAGTATAATGGTGAATCTCAGTTTGATGTTTTAGTATTTGATGGGGGGAGCTTGTGTGAGAAGGCAAGCTCTTATTTTGTTCGAAAATGTGGACACACTGAAGTTGAACATGTGGGCGGAAGTCTCGACAAGAGAAGAGACACAACAGATGGTCCTGTGGAAGAAGGTGGCATCCCTTTAAATGCTGGTGTGGAATGTGCTTCACCTGAGAAATCTGTGCATGCTAATGGTACCAAGCAGCCAATTAGTGTACCCTTTGAAGCTCCTAGTGAAGAGGCTTTCAATGCAGATATTGAATCTGCTGGTGCTGAGCATGTTACCCCTGTTGGAGTCACTCTGTCAGCTGTTCCCACCGGAACTGTTAGTGGGAAAAGGATCAGGAAGCTTGTTTCTGCTGTTAAGCATGTCCAGACCAAGCGGAGGGGAAGACCAGCTAAAGTGACTCATGTTACTGACAGAGCACTTGACTGGGTGTCTGGACTAGAAACTGGTGAACCAGTTTCTGCCGTTAGAAGTGGGCCATACGAGTTATATATCTCAAATAGAAGACCTGTTACAGAAGATGAGATTAAAAATACCTTGTCATTGGCCCAGGCAGAACGTCCTGAAGACAGTTTGGTTGTAGTCATGCGACCCTCACATGTTTACAAGAGATTCTTTGTGTCAATGCCTAACAAGTGGATAGGAGAGCATATCCCTCCAATGTCTCAAGATGTGATCTTGCGCATGGGTAAGGGTGAATGGATTGCTAGATACAGCTACCACAATATTCGTCATACTGGTGGCCTTACTGGTGGGTGGAAACACTTTGCCTTGGACAACAACCTGGAAGAGTTTGATGTTTGTGTGTTTAAACCAGCTGGCCAAATGAACGACACCTTGGTAATTGATATGACCATTTTCAGAGTTGTTCAGGAGATTGTTCCTCTCTCTGCTGTGTCTTCAACAGGAAAAAGAGGAGGTAGAAAACCAGCTCAGAATGTTGTTTTGACTGAAACATAG 1302 0.4416 MEVRNCNGCRSWVEDIYWSHFQFLHFAQFLRADYDQHLALPKTFSDNLKKKLPENVTLKGPSGVAWNIAMTTRDDTMYLAHGWQQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGSLCEKASSYFVRKCGHTEVEHVGGSLDKRRDTTDGPVEEGGIPLNAGVECASPEKSVHANGTKQPISVPFEAPSEEAFNADIESAGAEHVTPVGVTLSAVPTGTVSGKRIRKLVSAVKHVQTKRRGRPAKVTHVTDRALDWVSGLETGEPVSAVRSGPYELYISNRRPVTEDEIKNTLSLAQAERPEDSLVVVMRPSHVYKRFFVSMPNKWIGEHIPPMSQDVILRMGKGEWIARYSYHNIRHTGGLTGGWKHFALDNNLEEFDVCVFKPAGQMNDTLVIDMTIFRVVQEIVPLSAVSSTGKRGGRKPAQNVVLTET 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02105 433 Gene3D - 285 406 IPR015300 -
Spst8g02105 433 Pfam B3 DNA binding domain 307 396 IPR003340 GO:0003677
Spst8g02105 433 Pfam B3 DNA binding domain 37 112 IPR003340 GO:0003677
Spst8g02105 433 Gene3D - 20 119 IPR015300 -
Spst8g02105 433 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 406 IPR044837 -
Spst8g02105 433 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Spst8g02105 433 SUPERFAMILY DNA-binding pseudobarrel domain 305 391 IPR015300 -
Spst8g02105 433 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Spst8g02105 433 ProSiteProfiles B3 DNA-binding domain profile. 306 404 IPR003340 GO:0003677
Spst8g02105 433 CDD B3_DNA 38 114 IPR003340 GO:0003677
Spst8g02105 433 CDD B3_DNA 305 402 IPR003340 GO:0003677
Spst8g02105 433 SMART B3_2 306 404 IPR003340 GO:0003677
Spst8g02105 433 SMART B3_2 26 116 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02105 Spst-Chr8 29377424 29380130 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst8g02105 B3 3.1e-11 CL0405