Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00428 ATGACCCAGCAATCCGCGCCTCCGCCTCCGCCTCCTGCTCCGCCGCTGGCGCCACCACAACCGCAACCGCAACCGACAACTCCGCCGCCTCCTCCTCATCCAACCGAGAGCGTTCGAGTGCGCTGTGCCGGCTGCCGAATGATCCTCACAGTGGCGCCCGGCCTCACCGAGTTCGCCTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCGGAGCTCATGCCCAAGGACCGAGCCGCCGCCGCCGCAAATGCGCTCACTCCGGTGCCTCCGACGTCCACTCCGGCGTCGCAGCCTCCGCACGCGCCTGCACACGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCTTGCAAGGCCATCCTCAACGTCCCTCACGGCCTCGCGCGCTTTGCTTGTCCTCAGTGCAACGTTGACCTAGCCGTCGATGTTTCCAAGGTCAAGCAGTTCTTCCCCGCCGCCGCGCCTCCGCCAGAAGAAGTTAACGAGGTTTGCCTCCATTCCTTTGCTTCTGTTCTGCTTTTCGATGGTTTCGGTAGTTGTGAAGCGGCGAATGCGAATGTTGCTACTGGTTTACTGTGTAGTGTGATTCTAGGTTACGATAGGGTTTCTTTTGCCTTGATTGATATTGGGGACATGCGATATAAAGTTGTGATTGTGACCGCAGTTGATATTGTATTGTTTATAAGGGACGTACAGTATAAAATAGTGGAATATGCTTTATTGTCTGTTGATGAGGTTGCTGTTGAAGTTGAGAGGGACGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCGCCAAAAGTATCTATTGGATCTCCACACCCAGATCCTGTTGTGGAAACATCTTCCTTGTCTGCAGTGCAGCCGCCTGAGCCAACTTATGATCCAAAAATTAAAGATGATTTGGAGAGTTCAAAGACTTTGTCTTGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACATCTTCAACATCTACCAAATGGAGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCATCATGGAAGGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAATTTGATGCTAGAAGAGACTTGGATGACGTGGGTGCAACATGCATTGAAGGTAGGTGGTTCATGGCCATGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTTTTCTCAACATACAATAGCCTCATAGCGTCTTCTGAGAAAGGTCGTACTCGGCTCCAGCAGCTTGTACAGTGGTGTGGACCTGGGTTTGACGGTCTTATAATTTTTGATGAATGTCATAAAGCAAAAAATTTGGTCCCTGAAGCAGGTAGTCAGCCAACACGAACTGGAGAAGCAGTGGTTGATATCCAGGACCGGCTGCCTGAAGCTCGTGTTCTTTATTGCTCAGCAACTGGAGCATCTGAGCCTCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACTTCATTTGCTGATTTCCGTGAATTTCTAGGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGTCGGACACTTAGCTATGAAGGTGCAGAGTTTGAAGTTATCGAAGCACCATTAGAAGATAAAATGATGTTTGATAAGAGGAAGGGATCAGTTGAAATATATAAAAAGGCAGCTGAATTTTGGGCTGAGTTAAGAGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGACAAACCTAATTCTAGTCAACTATGGCGATTATACTGGGCAAGCCACCAGCGTTTTTTCAGACACCTATGTATGTCTGCTAAAGTTCCTGCTGCTCTGAGACTAGCAAAGCAAGCATTAGCTGAAGAAAAATGTGTAGTCATAGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGATTTTGTTTCTGGACCTCGTGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCGTTACCAGAAAAACCTGAACTTCTCCCAGGAGAAGATGGGGTGAAAGAACTTCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGCAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGAAACTGACTCTGGTGTTGAATCTACTGACTCTGATGATGAGTTTCAAATATGTGAAATTTGCACTACTGAGGAGGAAAGGAAAAAATTGTTACAGTGTTCATGCTGCGGTAAATTAGTCCACTCCACATGCTTGATGCCACCAATTGGTGATGTAGTTCCCGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCTGGCAAGACAGGCCTACATTGCTGAACTTCAGAAGAGGTATGATGCAGCCTTGGAACGCAAGACAAAAATATCAGAGATAATTCGATCTTTGGATCTTCCAAATAATCCCTTGGATGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCCGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTGCTACGGGCAAGGGTGTAACTTATCAGGCTCGTAATACAAAAGATGTCACTATGGAAATGGTTAACATGCACGAAAAGCAGCTATTTATGGATGGTAAAAAGTTAGTTGCTATTATCTCTGAAGCAGGATCAGCTGGGGTTTCTTTGCAGGCAGATAGACGAGCTGCAAACCGGAAACGAAGGGTTCATTTAACCCTGGAACTTCCATGGAGTGCTGACCGGGCAATTCAACAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCGGCACCAGAATACAGGATACTCTTTACAAATCTTGGTGGAGAGCGAAGATTTGCATCAATTGTTGCCAAGAGATTAGAATCACTTGGTGCTTTGACTCAGGGTGACCGCAGGGCTGGGCCTTCATTGAGTGCTTATAATTATGATAGTGCCTATGGAAAGAGGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCCGTGGTACCTCCGGGATGTTCATCTGACAAGCCAGATACAATTCATGATTTTATCGTGCAAGCAAAAGCTGCCCTTGTATCTGTTGGAATAGTAAGGGACACAGTTCTTGGTAATGGTAAAGATCTTGGAAGGTTATCTGGTCGCATTATTGATTCGGATATGCACGAGGTTGGGCGGTTCCTCAACAGGATTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTCGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACACAGGCATTGTTGACTTGAAAGCTAATGTAATTGAATTTCAAGGGACTCCAAAGACCGTTCATGTTGATCAATTGACTGGGGCCTCAACAGTCCTTTTTACATTCATCTTAGATCGTGGGATCACATGGGAGTTAGCAAATACGATGTTGAATGAAAAGCAGAGGGACGGGCTTGGCTCAGCCAATGATGGCTTTTATGAGTCAAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGAACCAATAATCAATATTCTATTTTTGATGATGATCTTGCCTCCAAGTTTCATCTTATATCGCCAAGATATGTTGCCCTGATTGCATCATTATATGCACAACGTTCTTTATGTCTTATTTTCACAAAAATCAACACCTTTTTGGGAGAACCCTGTATATACCTCAAGATCCAAATCAGGGTTGAGAACACTGTTACTAATGCACCACAGTGTAGCTGTGCTCTCGTTGATGCTTTTGTGGCTGCTGCTGGAATAGTGGGAATTGCAGTGTTATTGTGCCACTCCCCTCAAACTATTTTGTTGCCGCAGCTTCTTCTGCCCTTCTCCCTCTCTGATTGGCTGGCCTCTGCCTTTCACTGCGCTGCAAAATTGCATTTAGAGCTCTCCACATTTGCAGTTGAAATTTCTACGTTGAGGGAGTCGATAAAGCCCCTTGCGTCCCTTCTCCCTCTTTCTGCTTCGGGCATGTATAAAATAGTTCGTCCCCCTGTTGGAGAATCAAACAGGGAGATGCCTCTGTCTGAATTAAAAAGTAAGTATAGAAAAATTTCATCTTTAGAGAAGGCTCAGTCTGGTTGGGGAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATCGGCAACTTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTATTGGGTGGCCTCATCCTTCCTGTATGGGGTGCCGTAGAAAAGGCCCTTTCAAAGCAGGCCCGCCTAAGCCATAGGAGACTACGGGTTGTACGCATTGAAACTACCGTGGACTCCCAACGTATTGTTGGGCTTCTTGTTCCTAATGCTGCTGTGGAAACTGTGCTTCAAGGTTTAGCGTGGGTTCAAGAAATTGATGATTGA 4566 0.4575 MTQQSAPPPPPPAPPLAPPQPQPQPTTPPPPPHPTESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPKDRAAAAANALTPVPPTSTPASQPPHAPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCNVDLAVDVSKVKQFFPAAAPPPEEVNEVCLHSFASVLLFDGFGSCEAANANVATGLLCSVILGYDRVSFALIDIGDMRYKVVIVTAVDIVLFIRDVQYKIVEYALLSVDEVAVEVERDEDEGGMVGETFTDYRPPKVSIGSPHPDPVVETSSLSAVQPPEPTYDPKIKDDLESSKTLSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEGRWFMAMHALNKLPYSKLDSKSVGIREGVVFSTYNSLIASSEKGRTRLQQLVQWCGPGFDGLIIFDECHKAKNLVPEAGSQPTRTGEAVVDIQDRLPEARVLYCSATGASEPRNMGYMVRLGLWGDGTSFADFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMFDKRKGSVEIYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHLCMSAKVPAALRLAKQALAEEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESETDSGVESTDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDVVPEEWSCHLCKEKTDEYLLARQAYIAELQKRYDAALERKTKISEIIRSLDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANRKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDKPDTIHDFIVQAKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIEFQGTPKTVHVDQLTGASTVLFTFILDRGITWELANTMLNEKQRDGLGSANDGFYESKREWLGRRHFILAFERTNNQYSIFDDDLASKFHLISPRYVALIASLYAQRSLCLIFTKINTFLGEPCIYLKIQIRVENTVTNAPQCSCALVDAFVAAAGIVGIAVLLCHSPQTILLPQLLLPFSLSDWLASAFHCAAKLHLELSTFAVEISTLRESIKPLASLLPLSASGMYKIVRPPVGESNREMPLSELKSKYRKISSLEKAQSGWGEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDSQRIVGLLVPNAAVETVLQGLAWVQEIDD 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00428 1521 MobiDBLite consensus disorder prediction 1 37 - -
Spst11g00428 1521 Pfam P-loop containing NTP hydrolase pore-1 279 580 IPR039187 -
Spst11g00428 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 916 1021 IPR027417 -
Spst11g00428 1521 ProSiteProfiles Zinc finger PHD-type profile. 770 820 IPR019787 -
Spst11g00428 1521 PANTHER STRAWBERRY NOTCH-RELATED 33 1250 IPR026741 GO:0006355
Spst11g00428 1521 Coils Coil 832 852 - -
Spst11g00428 1521 MobiDBLite consensus disorder prediction 750 766 - -
Spst11g00428 1521 Pfam C-terminal domain on Strawberry notch homologue 861 1150 IPR026937 -
Spst11g00428 1521 MobiDBLite consensus disorder prediction 86 105 - -
Spst11g00428 1521 SUPERFAMILY FYVE/PHD zinc finger 763 822 IPR011011 -
Spst11g00428 1521 SMART PHD_3 772 818 IPR001965 -
Spst11g00428 1521 Gene3D - 306 515 IPR027417 -
Spst11g00428 1521 MobiDBLite consensus disorder prediction 1 36 - -
Spst11g00428 1521 FunFam Protein strawberry notch homolog 2 310 516 - -
Spst11g00428 1521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 720 829 IPR013083 -
Spst11g00428 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 528 IPR027417 -
Spst11g00428 1521 ProSitePatterns Zinc finger PHD-type signature. 773 817 IPR019786 -
Spst11g00428 1521 MobiDBLite consensus disorder prediction 285 305 - -
Spst11g00428 1521 MobiDBLite consensus disorder prediction 737 766 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00428 K26273 - gmx:100808670 1829.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00428 11 24967503 24988785 Spst11g00428 11 24967503 24988785 ECH