Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00422 ATGGAAAACCACATCTACTCCTCCTCCTACAGCCCTTCCACCAACTACCGATTCCGCGACCCCGACCCCACCGCCATGTTTCTTTCCCACCACCACCACCACGCCGCCGAATCAACCGCCCTTCGCTTTCCATCTTCCCTCACCGATGACATTGCCCCGCCCGGCGTCACCTCCCGCATCACCTCCTCCGCAGCTGCCACCTACATCTCCCCTTGGACGCCCGCCGCCTCCACCCTCGACCTCAAACGCTCCTCCGACGCTCTCTACCATTCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCAACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCTCAGAGGCCCGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAGCTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCAAAATTTCCTCTGAAAATGATGATGAATCTTCTGGCTTACCTGAGAGGCCATCAGAACCCCCTTGCACGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTACTTGTAAATTCCATCACCCCAAGGATATTCAGATTCAGTTGTCCGACGACTTGAGCCATAGTGCTGGACAGACACAAACAAATTATATGATAGGAGGGGCAACCGGAGATTCTCAGCCAATTAAGTCTCTTATATCTCCATCATTGCAAAATAGCAAAGGGCTTCCAGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGGAGTTGCAAGTATGGTGCCACTTGTCGCTACAATCATCCTGACAGGAACGCAATTAATCCACCCATTGCTGGATTAGGCCCTTCTATTTTGCCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTTTATCAAGCTTTTGATCCAAGGCTGTCAAGTCAAATGTCTCAGGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCAGGCCAGATTGAATGTGATTTTTACATGAAAACTGGCGAGTGTAAATTCGGGGAAAGATGCAAGTATCATCACCCAATTGATCGATCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGCTGTTATCTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACGTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCAGCCAATGAAGGGGAAGCAGAAGACTATTAA 1455 0.4722 MENHIYSSSYSPSTNYRFRDPDPTAMFLSHHHHHAAESTALRFPSSLTDDIAPPGVTSRITSSAAATYISPWTPAASTLDLKRSSDALYHSTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNVVTSEAPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKISSENDDESSGLPERPSEPPCTFYMKTGKCKFGATCKFHHPKDIQIQLSDDLSHSAGQTQTNYMIGGATGDSQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGPSILPSSAASLNIGLLSPAVSVYQAFDPRLSSQMSQVGIAETIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSANEGEAEDY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00422 484 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Spst11g00422 484 FunFam zinc finger CCCH domain-containing protein 37 382 475 - -
Spst11g00422 484 SUPERFAMILY CCCH zinc finger 386 412 IPR036855 GO:0046872
Spst11g00422 484 PANTHER PROTEIN PHOSPHATASE RELATED 286 470 - -
Spst11g00422 484 FunFam Zinc finger CCCH domain-containing protein 37 86 164 - -
Spst11g00422 484 SUPERFAMILY CCCH zinc finger 184 205 IPR036855 GO:0046872
Spst11g00422 484 SUPERFAMILY CCCH zinc finger 438 461 IPR036855 GO:0046872
Spst11g00422 484 Gene3D - 218 333 - -
Spst11g00422 484 Gene3D - 381 476 - -
Spst11g00422 484 Gene3D - 84 164 - -
Spst11g00422 484 Gene3D - 165 216 - -
Spst11g00422 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 248 IPR000571 GO:0046872
Spst11g00422 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 324 IPR000571 GO:0046872
Spst11g00422 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 206 IPR000571 GO:0046872
Spst11g00422 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 438 461 IPR000571 GO:0046872
Spst11g00422 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 153 IPR000571 GO:0046872
Spst11g00422 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 387 410 IPR000571 GO:0046872
Spst11g00422 484 ProSiteProfiles Zinc finger C3H1-type profile. 179 207 IPR000571 GO:0046872
Spst11g00422 484 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Spst11g00422 484 SUPERFAMILY CCCH zinc finger 225 249 IPR036855 GO:0046872
Spst11g00422 484 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Spst11g00422 484 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Spst11g00422 484 SMART c3hfinal6 179 206 IPR000571 GO:0046872
Spst11g00422 484 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Spst11g00422 484 SMART c3hfinal6 221 248 IPR000571 GO:0046872
Spst11g00422 484 SMART c3hfinal6 434 461 IPR000571 GO:0046872
Spst11g00422 484 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Spst11g00422 484 ProSiteProfiles Zinc finger C3H1-type profile. 434 462 IPR000571 GO:0046872
Spst11g00422 484 ProSiteProfiles Zinc finger C3H1-type profile. 221 249 IPR000571 GO:0046872
Spst11g00422 484 FunFam Zinc finger CCCH domain-containing protein 37 165 212 - -
Spst11g00422 484 SUPERFAMILY CCCH zinc finger 302 325 IPR036855 GO:0046872
Spst11g00422 484 SUPERFAMILY CCCH zinc finger 127 154 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00422 Spst-Chr11 24842774 24850382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00422 283 473 C2H2 Transcription Factor Family AT3G02830 35.417 7.67e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst11g00422 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00422 - - pvu:PHAVU_011G180700g 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00422 11 24842774 24850382 Spst11g00422 11 24842774 24850382 ECH