Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00421 ATGCAAGGAACCAAGATTGTGATGGAAGATAGAAAAAATGGCAGAGGAGGTCCACCTCAGGTGCACAATCCGATTATAGCTGACCCAATGCATGAGAAGCAGCAAAAGAGGGGTTTCGTTACAGAGAGAAGAATGAAGTACGTGTTGGTGACAGGTGGTGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCTAGCAGTATTGGAGTGCTCCTTCAGGCCTGTGGCTTTCGCGTTACTTCTATCAAGATTGATCCCTATCTGAACACTGATGCAGGGACAATGTCTCCTTTTGAACATGGGGAAGTGTTTGTTTTAGATGATGGCGGTGAGGTTGACCTTGATCTTGGAAACTATGAACGTTTCCTGGACCTCAAATTAACTCGCGACAATAATATCACAACAGGAAAAATTTATCAGTCTGTAATTGCAAAGGAGAGAAGAGGAGACTATCTTGGGAAGACTGTGCAGGTTGTTCCACACATTACTGATGCCATCCAAGAATGGATAGAGCGTGTGGCACAGATACCAGTTGATGGGAAAGAAGGCCCAGCTGATGTTTGTGTCATTGAGTTGGGTGGAACTATTGGGGATATTGAGTCTATGCCTTTTATTGAAGCACTTGGCCAATTTTCGTACCGTGTAGGCCCCGGAAACTTCTGTTTAGTTCATGTCAGCCTGGTCCCTGTTCTCAATGTTGTTGGTGAACAGAAAACAAAGCCAACTCAGCACAGTGTCCGCCAACTTAGAGGGTTAGGGTTAACCCCAAACCTTCTTGCTTGTCGCAGTTCAAAGGAACTTGATGACAATGTTAAGGAAAAACTTTCTCAATTTTGTCATGTTCCGTCATCAAACATACTTACTCTGTATGATGTTCCAAATATTTGGCACATTCCTTTGCTATTAAGAGACCAGAAAGCGCATGAGGCAATTCTGAAGACATTAAACCTGTGCGGTGTTGCTACAGAGCCCAATTTTAAGGAGTGGATTGCAACAACAAAAGTATATGAAAAATTTCATGAATCTGTTAGAATTGCAATGGTAGGAAAATATACTAATCTATCAGATGCATATCTTTCTGTACTGAAGGCACTTATGCATGCTTCTGTTGCTTGCAATCGCAAGCTTGTTGTGGACTGGGTTCCTGCCGAAAATCTAGAAGATGATACATCTAAAGAGGATCCTGATGCATATAATACCGCTTGGGGTCTTCTGAAGGGTGCTAATGGGATTCTAGTTCCAGGAGGATTTGGTGATAGAGGAGTGCAAGGAAAAATTCTTGCTACTAAGTATGCTCGAGAAAATAGTGTTCCATTTCTAGGCATTTGCTTGGGGATGCAAATTGCTGTCATTGAATTTTCAAGATCTGTTCTTGGTCTTCATGATGCTAATAGCACAGAATTTGATCCCAAAACTAAAAACCCATGCGTCATATTTATGCCAGAAGGTTCAAAGACTCATATGGGGGGAACTATGCGTCTCGGTTCAAGGAGAACTTACTTTCATCTTGCTGACTGCAAATCGGCCAAGTTGTATGGCAATGCACACTTCGTTGATGAGCGACATCGGCATCGATATGAGGTTAATCCTGACATGATATCACAACTTGAGAGTGCCGGTCTGTGCTTTGTTGGCAAAGATGAAACAGGGAAGCGCATGGAGATAGTTGAGTTTCCTGGCCATCCTTTCTTCATTGGTGCTCAATTTCACCCTGAGTTTAAGTCCAGACCAGGGAAACCATCTCCATTATTCTTAGGACTAATAACAGCAGCATGTGATAGGACAATTGTGCCTGCAAGCAAAGGGTTTGGCAAGCTAGCAAATGGGATACATAGTGCACACTCACCAATGTTGAAAGCACATAATGGAAATGGGATACATAGTTCCTTAAATGGTGTATATACAAGTACAACTGCGAATGGGGTGTGTGTGGATGGTAACTGTTAA 1944 0.4275 MQGTKIVMEDRKNGRGGPPQVHNPIIADPMHEKQQKRGFVTERRMKYVLVTGGVVSGLGKGVTASSIGVLLQACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDLKLTRDNNITTGKIYQSVIAKERRGDYLGKTVQVVPHITDAIQEWIERVAQIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRQLRGLGLTPNLLACRSSKELDDNVKEKLSQFCHVPSSNILTLYDVPNIWHIPLLLRDQKAHEAILKTLNLCGVATEPNFKEWIATTKVYEKFHESVRIAMVGKYTNLSDAYLSVLKALMHASVACNRKLVVDWVPAENLEDDTSKEDPDAYNTAWGLLKGANGILVPGGFGDRGVQGKILATKYARENSVPFLGICLGMQIAVIEFSRSVLGLHDANSTEFDPKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFHLADCKSAKLYGNAHFVDERHRHRYEVNPDMISQLESAGLCFVGKDETGKRMEIVEFPGHPFFIGAQFHPEFKSRPGKPSPLFLGLITAACDRTIVPASKGFGKLANGIHSAHSPMLKAHNGNGIHSSLNGVYTSTTANGVCVDGNC 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00421 647 Gene3D - 38 336 IPR027417 -
Spst11g00421 647 Pfam Glutamine amidotransferase class-I 353 588 IPR017926 -
Spst11g00421 647 NCBIfam CTP synthase (glutamine hydrolyzing) 44 589 IPR004468 GO:0003883|GO:0006221
Spst11g00421 647 FunFam CTP synthase 45 336 - -
Spst11g00421 647 SUPERFAMILY Class I glutamine amidotransferase-like 341 592 IPR029062 -
Spst11g00421 647 FunFam CTP synthase 339 599 - -
Spst11g00421 647 Gene3D - 338 599 IPR029062 -
Spst11g00421 647 PANTHER CTP SYNTHASE 45 593 IPR004468 GO:0003883|GO:0006221
Spst11g00421 647 CDD CTPS_N 46 312 IPR017456 GO:0003883|GO:0006221
Spst11g00421 647 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 343 596 - -
Spst11g00421 647 Hamap CTP synthase [pyrG]. 45 594 IPR004468 GO:0003883|GO:0006221
Spst11g00421 647 MobiDBLite consensus disorder prediction 1 25 - -
Spst11g00421 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 316 IPR027417 -
Spst11g00421 647 Pfam CTP synthase N-terminus 46 316 IPR017456 GO:0003883|GO:0006221
Spst11g00421 647 CDD GATase1_CTP_Synthase 342 587 IPR033828 GO:0003883|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00421 Spst-Chr11 24833241 24841328 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00421 11 24833241 24841328 Spst11g00421 11 24833241 24841328 ECH
Spst11g00421 11 24833241 24841328 Spst5g01757 5 53350525 53364651 PCT