Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03540 ATGGTATTGGTTGAAGGTCATCTTTTTCCTAGATTGCCAAAAGTAGTCATGACTATGACAAGGGGAGAGAAGGCTGAGTTAGTTGTTCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGTGGGCTCCATTCAATTCCCCCAAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTGTGAAAGAAGGGGAGGGTGCTTTCACAGCCGGTGAGGGTGCAAATGTTACTGTCAGCTACACAGCTATGCTAAAAGATGGCACTGTATTTGAGAAAGGAGGAATTGGTGAAACACAACCCGTGAAGTTCATAACTGATGAGGAACAAGTGATTGCTGGTCTAGACCGAGCAGTGTCAACAATGAAAAAAGGTGAGAGGGCCATAATTAGCATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACGAGATTTAGCTATCCTGCCACCAGGCTCGAATGTAGTGTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAATCAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTGTTTAAAGGTGGCAAGTATCATCAAGCAGGGAAGAAGTATGAAAAGGCTGCCGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCACAAGCTAGCTAAGGCATTGAGAGTGACATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAACTATGTTCTCAGGTGCTTGATGTTGAGGTTTACAATGTAAAAGCTTTGTACAGACGGGCACAAGCATTTATAGAGACTGGAGACTATCTTTTGGCAGATATAGACATCAAGAAAGTTCTTGAGGTGGACCCTCATAACAGGGAGGTAATGATAATTAAGAGGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATGTTTGCACCTAAAACAAAGGACTCATCCATGGCAACAAAGAGATTGAAGGTTGAGAAAGAAGAGGATGGGAGGGAAAACAAAGAGGTGAGAATGGAAATGGATATAGTTGCTGATAACGCAGCTCCTCCTGATGGTGGTATAATTGTTGATTCTTGTTGA 1197 0.4169 MVLVEGHLFPRLPKVVMTMTRGEKAELVVQPQYAFGEKGREAGSGLHSIPPNSVLHVNIELVSFKPVINVTGDSMVLKKIVKEGEGAFTAGEGANVTVSYTAMLKDGTVFEKGGIGETQPVKFITDEEQVIAGLDRAVSTMKKGERAIISIHPDYAFGNVEVRRDLAILPPGSNVVYDIEMMDFIKEKAPWELNSNQKIEVAGRKKEEGNLLFKGGKYHQAGKKYEKAADFVSEDGSFGDDEHKLAKALRVTCWLNGAACSLKLNDFPGAIKLCSQVLDVEVYNVKALYRRAQAFIETGDYLLADIDIKKVLEVDPHNREVMIIKRKLKQLQADSDKKDAKLYENMFAPKTKDSSMATKRLKVEKEEDGRENKEVRMEMDIVADNAAPPDGGIIVDSC. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03540 398 Gene3D - 1 65 IPR046357 GO:0003755
Seca8g03540 398 SUPERFAMILY FKBP-like 5 66 - -
Seca8g03540 398 SUPERFAMILY FKBP-like 71 202 - -
Seca8g03540 398 Gene3D - 66 189 IPR046357 GO:0003755
Seca8g03540 398 FunFam Peptidylprolyl isomerase 190 345 - -
Seca8g03540 398 SMART tpr_5 202 235 IPR019734 GO:0005515
Seca8g03540 398 SMART tpr_5 285 318 IPR019734 GO:0005515
Seca8g03540 398 SMART tpr_5 251 284 IPR019734 GO:0005515
Seca8g03540 398 PANTHER PEPTIDYLPROLYL ISOMERASE 9 66 - -
Seca8g03540 398 ProSiteProfiles TPR repeat profile. 285 318 IPR019734 GO:0005515
Seca8g03540 398 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 93 185 IPR001179 GO:0003755
Seca8g03540 398 Gene3D Tetratricopeptide repeat domain 190 345 IPR011990 GO:0005515
Seca8g03540 398 FunFam Peptidylprolyl isomerase 66 187 - -
Seca8g03540 398 SUPERFAMILY TPR-like 198 348 IPR011990 GO:0005515
Seca8g03540 398 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 65 IPR001179 GO:0003755
Seca8g03540 398 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 90 181 IPR001179 GO:0003755
Seca8g03540 398 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 5 62 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03540 Seca-Chr8 101964230 101970784 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03540 5 348 Calmodulin-binding Proteins AT3G25230 53.623 9.65e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03540 K09571 - gmx:100798382 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03540 8 101964230 101970784 Seca8g03540 8 101964230 101970784 ECH