Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03522 ATGGCCAATAATCCTCAACCCTCCGGTATGCAGTATCGGCCAGTCATTCAAGCTCAGCAAGGGCAACCATTTGTTCCAATGACTTCACAACAGTTTGGACCTGCAGGACATGCTATTCCCTCTTCAAATGTTGGAATGCCTGTTGTTCAGGGTCAGCAATTGCAGTACTCTCAACCAATGCAACAGTTGACTCCAAGACCAATTCAGCCTGGTCATCCTGCTTCTTCATCACAGGCTATACCTATGCCATATATACAGACAAACAGGCCACTGACATCTGTTCCACCACATTCACAGCAAACTGTTCCTCACTTAACCAATCATATACCTGGCTTGGCTGTTTCGGGAGCAACTCCCCATTCTTCATATACTTTCACACCATCTTATGGTCAGCAGCAAGATAATGCTAATGCATTGGCCCAATACCAGCATCCACCTCAAATGCTTGCACCTCCTGCTGGTCAACCTTGGTTGTCCTCAGTATCTCAGAGTACTGCAGCTGTTACATCAGTGCAGCCAGCTGGAGTACAATCATCTGGTACTACATCAACTGAGGCAGCAACTAATGCCACTAACCAGCAGTCCTTATCTGATTGGCAAGAGCATACTTCTGCTGATGGAAGAAGATATTACTACAACAAGAGGACAAGGCAATCTAGTTGGGAGAAACCTTTGGAATTAATGTCACCTATTGAGAGGGCTGATGCATCAACTGTCTGGAAAGAATTCACTTCTTCAGAAGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCTACGTGGTCAATACCAGAGGAACTTAAGATGGCCCGTGAGCAGGCACAGAAAGCTGTGAACCAGGGATTGCAGTCTGAAACAAGTGATACATCCAATGCTGCTGTCTCCTCTGCTACAACATCAACAGCAGCTAATGCAGCTAGCACATCTAATGGGCTTGCTTCAAGCCCATCTTCTGTCGCACCAATTGCAGCAATTGATTCTCAACAGTTGGTTTCTGGATCATCAGGGATCTCCATTTCCCACTCCAGCATTACTTCAAGCACCATAGGAGTTGAACCAAGCACTGTGGTAACTATGAGCACTGCACCTACTATTGAAAATCAAGCATCTCAGGATTTCGCTTCTAGCAATGGAGCTTCTCTTCAAGATATTGAGGATGCCAAAAGAGGATTACCTGTGGTTGGAAAAATTAATGTGACTCCACCTGAGGAGAAAACCAATGACGATGAAACCTTGGTATATGCAAATAAGCTGGAAGCAAAAAATGCTTTTAAAGCGCTTTTGGAATCTGTAAATGTTCAGTCTGATTGGACATGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACTCTTGGTGAGCGAAAACAAGCTTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTAGAGGCTGAAGAGAGACGCATGAAGCAGAAAAGAGCTCGTGAAGAATTCACAAAGATGTTGGAAGAGTGCAAGGAACTGACATCATCAACAAGATGGAGCAAAGCTATAAGTATGTTTGAAAATGATGAACGGTTCAATGCTGTTGAAAGACTAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGGAAAAAGAAAATGCTGCAGAGGAACACCGGCGGAGTATCGCAGAATATAGGAAATTTCTGGAGTCCTGTGATTATGTGAAGGTGAACAGTCAATGGCGGAAAATCCAAGATCGGTTAGAGGATGATGATAGATATTTACGGCTTGAAAAAATTGATCGCTTGCTTGTGTTCCAGGACTATATTCGTGACTTGGAGAAGGAAGAAGAAGAACAAAAAAGAATACAGAAGGATCGACTTCGTCGGAGTGAAAGGAAAAATCGTGATGCATTTCGCAAGTTGCTGGAAGAACATGTTGCTGCTGGAGTTCTTAATGCTAAAACCCCATGGCGAGAATACTGCTTGAAGGTCAAGGTTTTGCCTCAATATCAAGCTGTTGCATCGAATACGTCTGGTTCTACTCCAAGAGATTTATTTGAGGATGTTGTTGAAGATCTTGAAAAACAGTATCATGAAGACAAGACACTCGTAAAAGATACAATTAAGTCAGGCAAGATCACTGTAGTGGCTACATCAGTATTTGAGGACTTTAAGTCTGCTGTGTTGGAGGAAGTTGCTTGGCAAACAATTTCTGAGACCAATTTGAAGGTAATGTATTTTGATTGTAATCTCTCATTTTGGTTTCATTTATTGCTCCCAAAATATAAGTCTATACAATTTATGCTTATATTTGAAGAGTTATTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGCCAGCGTCTTGCTGATGACTTTACTAACTTGTTATATACATTCAAGGATATTACTACTACTTCAAAATGGGATGATTGCAAGGAACTTTTTGAGGAGACACAAGAGTACAGATCAATTGGGGATGAAAGCTACAGTAGAGAAATTTTTGAGGAATACGTTACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCCAAAAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAGGAGAAAAAAGAGAAGGATAGAGAACGTGAGAAAGAAAAGTCTAAGGAACGACATAAGAAGGAGGAAACAGATAGTGATAAAGACATAACTGACAGCCGCCATGATTACAAAGAGGAGAAGAAAAAGGAAAAGGATAAAGAAAGGAAACATCGGAAGAGGCGTCAAAGCAGTGTAGATGATGTTGATTCTGAAAAGGATGAGAAAGAAGAATCTAAAAAATCGCGAAGACATGGCAGTGAACGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGAATCAGAGAATGAAAGCCGACATAGAAGACACAAGAGGGAGCACTGGGATGGTTCCAGGAAAACTGGGGGGCATGAGGAACTTGAAGACGGGGAGCTCGGTGATGATGTAGAGGCTTAG 3009 0.4187 MANNPQPSGMQYRPVIQAQQGQPFVPMTSQQFGPAGHAIPSSNVGMPVVQGQQLQYSQPMQQLTPRPIQPGHPASSSQAIPMPYIQTNRPLTSVPPHSQQTVPHLTNHIPGLAVSGATPHSSYTFTPSYGQQQDNANALAQYQHPPQMLAPPAGQPWLSSVSQSTAAVTSVQPAGVQSSGTTSTEAATNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKMAREQAQKAVNQGLQSETSDTSNAAVSSATTSTAANAASTSNGLASSPSSVAPIAAIDSQQLVSGSSGISISHSSITSSTIGVEPSTVVTMSTAPTIENQASQDFASSNGASLQDIEDAKRGLPVVGKINVTPPEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSTRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRSIAEYRKFLESCDYVKVNSQWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRLRRSERKNRDAFRKLLEEHVAAGVLNAKTPWREYCLKVKVLPQYQAVASNTSGSTPRDLFEDVVEDLEKQYHEDKTLVKDTIKSGKITVVATSVFEDFKSAVLEEVAWQTISETNLKVMYFDCNLSFWFHLLLPKYKSIQFMLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTTSKWDDCKELFEETQEYRSIGDESYSREIFEEYVTYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKERHKKEETDSDKDITDSRHDYKEEKKKEKDKERKHRKRRQSSVDDVDSEKDEKEESKKSRRHGSERKKSRKHANSPESENESRHRRHKREHWDGSRKTGGHEELEDGELGDDVEA. 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03522 1002 CDD WW 240 267 IPR001202 GO:0005515
Seca8g03522 1002 Coils Coil 767 791 - -
Seca8g03522 1002 MobiDBLite consensus disorder prediction 273 296 - -
Seca8g03522 1002 Pfam WW domain 240 265 IPR001202 GO:0005515
Seca8g03522 1002 Pfam WW domain 197 224 IPR001202 GO:0005515
Seca8g03522 1002 FunFam Pre-mRNA-processing protein 40A 474 547 - -
Seca8g03522 1002 Gene3D FF domain 779 853 IPR036517 -
Seca8g03522 1002 SUPERFAMILY FF domain 479 547 IPR036517 -
Seca8g03522 1002 SMART ww_5 235 267 IPR001202 GO:0005515
Seca8g03522 1002 SMART ww_5 194 226 IPR001202 GO:0005515
Seca8g03522 1002 SUPERFAMILY FF domain 620 695 IPR036517 -
Seca8g03522 1002 SUPERFAMILY FF domain 786 847 IPR036517 -
Seca8g03522 1002 Gene3D - 234 292 - -
Seca8g03522 1002 SUPERFAMILY WW domain 198 232 IPR036020 GO:0005515
Seca8g03522 1002 SUPERFAMILY FF domain 410 472 IPR036517 -
Seca8g03522 1002 ProSiteProfiles FF domain profile. 418 472 IPR002713 -
Seca8g03522 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 234 267 IPR001202 GO:0005515
Seca8g03522 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 197 226 IPR001202 GO:0005515
Seca8g03522 1002 ProSiteProfiles FF domain profile. 625 688 IPR002713 -
Seca8g03522 1002 Coils Coil 534 554 - -
Seca8g03522 1002 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 193 787 IPR039726 GO:0045292
Seca8g03522 1002 ProSiteProfiles FF domain profile. 553 607 IPR002713 -
Seca8g03522 1002 MobiDBLite consensus disorder prediction 849 1002 - -
Seca8g03522 1002 Coils Coil 905 925 - -
Seca8g03522 1002 Gene3D FF domain 619 699 IPR036517 -
Seca8g03522 1002 Gene3D FF domain 550 618 IPR036517 -
Seca8g03522 1002 Gene3D FF domain 473 549 IPR036517 -
Seca8g03522 1002 MobiDBLite consensus disorder prediction 924 948 - -
Seca8g03522 1002 FunFam pre-mRNA-processing protein 40A isoform X1 417 472 - -
Seca8g03522 1002 ProSitePatterns WW/rsp5/WWP domain signature. 240 265 IPR001202 GO:0005515
Seca8g03522 1002 FunFam Pre-mRNA-processing protein 40A 779 852 - -
Seca8g03522 1002 FunFam Pre-mRNA-processing protein 40A 548 616 - -
Seca8g03522 1002 Coils Coil 601 629 - -
Seca8g03522 1002 MobiDBLite consensus disorder prediction 849 917 - -
Seca8g03522 1002 SUPERFAMILY FF domain 545 614 IPR036517 -
Seca8g03522 1002 FunFam Pre-mRNA-processing protein 40A 618 699 - -
Seca8g03522 1002 Pfam FF domain 420 469 IPR002713 -
Seca8g03522 1002 Pfam FF domain 790 837 IPR002713 -
Seca8g03522 1002 Pfam FF domain 558 604 IPR002713 -
Seca8g03522 1002 Pfam FF domain 629 684 IPR002713 -
Seca8g03522 1002 Pfam FF domain 487 537 IPR002713 -
Seca8g03522 1002 ProSitePatterns WW/rsp5/WWP domain signature. 199 224 IPR001202 GO:0005515
Seca8g03522 1002 SUPERFAMILY WW domain 227 268 IPR036020 GO:0005515
Seca8g03522 1002 MobiDBLite consensus disorder prediction 277 296 - -
Seca8g03522 1002 Coils Coil 466 489 - -
Seca8g03522 1002 CDD WW 197 226 IPR001202 GO:0005515
Seca8g03522 1002 MobiDBLite consensus disorder prediction 957 991 - -
Seca8g03522 1002 SMART FF_2 553 607 IPR002713 -
Seca8g03522 1002 SMART FF_2 785 840 IPR002713 -
Seca8g03522 1002 SMART FF_2 627 688 IPR002713 -
Seca8g03522 1002 SMART FF_2 418 472 IPR002713 -
Seca8g03522 1002 SMART FF_2 485 540 IPR002713 -
Seca8g03522 1002 Gene3D FF domain 418 472 IPR036517 -
Seca8g03522 1002 Coils Coil 838 890 - -
Seca8g03522 1002 MobiDBLite consensus disorder prediction 172 201 - -
Seca8g03522 1002 Gene3D - 192 233 - -
Seca8g03522 1002 ProSiteProfiles FF domain profile. 485 540 IPR002713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03522 Seca-Chr8 101367807 101384192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03522 K12821 - gmx:100806019 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03522 8 101367807 101384192 Seca8g03522 8 101367807 101384192 ECH