Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03487 ATGTTGAATCCTATGAGCAATAAAAGTAGCTGCTCAGGGTTGTTCTTTGTAGTGAGGCACTACTCTAGAATTCGTCCCCCAAAACCTGTATCTGTAGAACCTGTCATTAGAGTATCTAACAACATTGCCCGCTTGGATGTGCCTAAAGAAGGTCCAAAACCCAGACAGCTACTATCACTGCCTCCTTTTCCTGGTCACCTCTTGCCTGCCAAGAAGTCAATCAGTGCTCCTGGGCAGCATGATCGTGTCACTGCTGTCAATTGGATTAAGTATTACTTCAAGGGCACGTGGGGATCTGTCATTGAGTCCCATTTCAGGGAGGGTCTTGTGCAAATGGAGCACCTGATTGCGGATGACTCTTTAACTGAGAAGGAAGAGCTGATGAAACGTATGCGAAAGATTAGACCTAATGAAGTGATGAAGCATGGGGCCAGAGTTCATGTCCCTGTATCAATGGCTGAGACTAGAATTTCCAAAAGATATGATGCTATACCAAGTGGAACACTATATCCAAATGCTGACGAAATTAAGTATCTGCAAAGGCTTGTGATTTACAAGGACTCAGCTATTATTGTGCTAAACAAACCTCCAAAATTGCCGGTTAAGGGGAATCTACCAGTTCACAATAGCATGGATGCATTGGCAGCTGCAGCACTGTCCTATGATTATGATGAAGGTCCTAAACTGGTCCACCGTCTTGACAGAGAGACTAGTGGTATCATTTTGCTGGGGAGAACAAAAGATAGTGTATCTCACCTTCAATGGTTATTCAGTAACATTAACAATGCAAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGCTACATATCAGAGATATTGGGCATTAGTCATAGGAACTCCCAAGGAGAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTGCTTCTGAATGATGGGAAGACTGAGAGGGTAATACTAGCTCACAATTCAAGTATAGAACCTCAGCAAGAGGCTGTAACTGAGTATCGGGTGCTTGGTCCAAAAATTAATGGATGCTCATGGGTTGAGTTGCGTCCAATTACTTACCGGAAACATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACACCAATAGTGGGTGACTATAAGTATGGCTGGTTTGTGCATAGCCGATGGAAACAAATGCCACGAGTTGATATTGAGCCAACAACTGGAAAACCATTTAAGTTGCGGAGGCCAGAAGGCCTAGAAGTTCAGAAGGGAAGCGTTTTATCTAAGGTCCCTCTATTGCATCTTCACTGCAGAGAACTTGTACTCCCCAACATTGCTAAGTTTCTGCATGTTTTGGAGAAGAGCTCAGAAGAACTGCACCCTTCACTTAGCGTGCAGCCTGATATTCTTCGCTTTGTGGCAACAATGCCTTCACATATGAGAATTAGTTGGAATCTTATGTCATCATATTTAGTTTGA 1440 0.434 MLNPMSNKSSCSGLFFVVRHYSRIRPPKPVSVEPVIRVSNNIARLDVPKEGPKPRQLLSLPPFPGHLLPAKKSISAPGQHDRVTAVNWIKYYFKGTWGSVIESHFREGLVQMEHLIADDSLTEKEELMKRMRKIRPNEVMKHGARVHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGIILLGRTKDSVSHLQWLFSNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHNSSIEPQQEAVTEYRVLGPKINGCSWVELRPITYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPFKLRRPEGLEVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLEKSSEELHPSLSVQPDILRFVATMPSHMRISWNLMSSYLV. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03487 479 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 77 474 - -
Seca8g03487 479 ProSitePatterns Rlu family of pseudouridine synthase signature. 230 244 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca8g03487 479 SUPERFAMILY Pseudouridine synthase 175 432 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca8g03487 479 Pfam RNA pseudouridylate synthase 190 361 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca8g03487 479 CDD PseudoU_synth_RluA_like 190 386 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca8g03487 479 Gene3D Pseudouridine synthase 172 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03487 Seca-Chr8 99838912 99847250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03487 - - gmx:100817786 858.596