Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03479 ATGGATTTCATGAAGGTCTTCGATCAAACCGTTCGAGAAATAAAGAGAGAAGTGAATCTGAAGGTACTCAAGGTTCCCGAAATCGAACAGAAGGTATTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTTCTGCACTGGCAGAGATTGCACAGGCTACCAAAAAATTTACTGAATGTCAACTGGTCATGAATGTTCTTTGGACAAGACTGAGTGAAACTGGAAAGGATTGGCGATATGTATACAAGGCATTAGCTGTTATAGAGTATTTGGTAGCACATGGATCTGAACGTGCAGTTGATGACATTATAGAACATACTTTCCAGATCTCAGCACTTTCTAGTTTTGAATATATTGAGCCTAGTGGGAAGGATGTGGGACTCAATGTCAGGAAGAAGGCAGAAAACATTGTGGCCCTTTTGAATGATAGAGAAAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAGTACGTTGGAGTTTCTTCTAGTGGAATCACATACAAGTCTGGGTCGGCCTCATATAGTAGTGGCAGCTATCAGAGCAGTAATAAATATGGAGGCTTTGGTTCAAGAGATGGTGACAGGTTTAGTGACAGCTATGGAGACAAGGGGTATGAAGAAGAAAAAGTTGAGAAAGACTATGCTGGAAAATCACGCCATGGCGTCGCAAGTGACAATCAAGAGAACTCCTTCAAGAAGGGTTCTGCACGGTCTGTCAGCAAAAGCCAGGAGAACACATCATCTAGAGTATCAAAATCAACCACTAATGTCAACAAGTCAGTTCCTTCTCAAAGTTCAAGTGTACCTGCAAACAATACGGAGGATGACTTTGATGATTTTGATCCAAGAGGAACTTCTACTAAGGCTCCAGCTGGAAGCTCAAACCAGGTTGATCTCTTTGGACAAGATTTAATTGGTGATCTCATGGATGCTCCAGCATCTGTCCCTGTAGAAAAGCCAGCAACTAATGATGCGTCAGAGGTTGATCTCTTTGCGGATGCATCATTTGTATCAGCAGCACCTCATGTGGACAAAGGAGCTAGTTCTCAACCACAGGAAGTGGATCTCTTTTCTTCGCAACCAGCCATTCCTTCAGCTACACCAACAGTTGACTTGTTTTCCATTCCTGAACCAGTTGTGCAGCCTGGCAGCAAGTCAGAAAACTCTGGTCCTATGAATAATAGCACTATTGATCCCTTTGCTGCTGTTCCCCTTAATAATTTTGATGGATCTGATGTTTTTGGTGAATTTACTTCTCAATCTGATTCCGTATCTTCACAGCCCTCAAATAATGTTGTCAGCGATGGCAGCCATGGTAATCTGAATGGTAAATCTTTAGCAGACTCTAAAGTTCCACCTAAAAAAGATGCTTTTCAGGTGAAGTCTGGCATTTGGGCTGATTCACTAAGCCGTGGATTGATTGATCTCAATATATCTGCTCGTAAGTTTACTACCTTGACTACTTTAATAGCTTTTGAACTGCATAATACATTCTTTTATTAG 1518 0.417 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGSALAEIAQATKKFTECQLVMNVLWTRLSETGKDWRYVYKALAVIEYLVAHGSERAVDDIIEHTFQISALSSFEYIEPSGKDVGLNVRKKAENIVALLNDREKIHEVRNKAAANRDKYVGVSSSGITYKSGSASYSSGSYQSSNKYGGFGSRDGDRFSDSYGDKGYEEEKVEKDYAGKSRHGVASDNQENSFKKGSARSVSKSQENTSSRVSKSTTNVNKSVPSQSSSVPANNTEDDFDDFDPRGTSTKAPAGSSNQVDLFGQDLIGDLMDAPASVPVEKPATNDASEVDLFADASFVSAAPHVDKGASSQPQEVDLFSSQPAIPSATPTVDLFSIPEPVVQPGSKSENSGPMNNSTIDPFAAVPLNNFDGSDVFGEFTSQSDSVSSQPSNNVVSDGSHGNLNGKSLADSKVPPKKDAFQVKSGIWADSLSRGLIDLNISARKFTTLTTLIAFELHNTFFY. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03479 505 MobiDBLite consensus disorder prediction 175 192 - -
Seca8g03479 505 MobiDBLite consensus disorder prediction 423 449 - -
Seca8g03479 505 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Seca8g03479 505 FunFam Clathrin interactor 1 18 165 - -
Seca8g03479 505 PANTHER EPSIN/ENT-RELATED 4 487 - -
Seca8g03479 505 Pfam ENTH domain 27 147 IPR013809 -
Seca8g03479 505 SMART enth_2 26 152 IPR013809 -
Seca8g03479 505 Gene3D - 19 165 IPR008942 -
Seca8g03479 505 MobiDBLite consensus disorder prediction 423 457 - -
Seca8g03479 505 CDD ENTH 28 144 - -
Seca8g03479 505 MobiDBLite consensus disorder prediction 200 224 - -
Seca8g03479 505 MobiDBLite consensus disorder prediction 227 278 - -
Seca8g03479 505 SUPERFAMILY ENTH/VHS domain 7 152 IPR008942 -
Seca8g03479 505 MobiDBLite consensus disorder prediction 175 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03479 Seca-Chr8 99677580 99683630 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03479 K12471 - gmx:100789110 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03479 8 99677580 99683630 Seca8g03479 8 99677580 99683630 ECH