Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03478 ATGGCTTCTTCTCCTCCCACTCCCTCTCCTTCCTATCTCACACATCTTCCTCTTCCTCCATTTGGTGAGAAGCCTCTGGATGACGACGAATCACGCGTTCCCATTCATGTTGTGACCAACGCGTCTCAGCTTCCTGTTGAATTTTTGGAACCCTCACCTCAATCGCAGCTCGTCATTGGTTTTGACTGCGAGGGTGTTGACTTGTGTCGCAATGGCACTCTTTGCATTATGCAGCTTGCTTTTCCTGATGCTGTATACTTGGTTGATGCAATCCAAGGGGGAGACGTGCTTATCAAAGCCTGTAAGCCTGCACTTGAGTCTACCTACATCACAAAAGTGATTCATGATTGCAAACGGGATAGTGAGGCATTGTACTTTCAGTTTGGCATCAAGTTAAACAATGTGGTGGATACCCAGATTGCTTATTCACTTATAGAAGAGCAAGAAGGACGAAAGAGATTACCAGATGATTACATTTCATTTGTTAGCCTCCTTGCAGATCCACGTTATTGTGGCATATCATATCTTGAGAAGGAAGAAGTCCGTGTCCTCCTTCGACAGGACCCCAAGTTTTGGACATACAGACCTTTATCTGAACTAATGGTCCGTGCTGCCGCTGATGATGTCCGTTTTCTTCTCTACATTTATCATCGAATGATGGAGAAATTAAATGAACGGTCTTTATGGTATCTTGCTGTTCGTGGTGCTTTGTATTGCCGATGTTTCTGTGTGAACAGTAATGATTATGCGGATTGGCCATCTCTACCTCCGGTTCCAGATAAGCTAAAAGCTGATGGAAATGGTCCTGAGGAAGAAATTCTTTCAGTTCTTGATGTTCCCCCAGGAAAGATGGGATGCGTTATTGGGAAAAAAGGGGCTACGATTTTGTCAATTAAGGAGTCTTGCAATGCGGAAATTCTCATTGGAGGTTCCAAGGGCCCACCTGACAAGGTTGGTATATCAGCATCCCTTGCCATGTGA 981 0.4475 MASSPPTPSPSYLTHLPLPPFGEKPLDDDESRVPIHVVTNASQLPVEFLEPSPQSQLVIGFDCEGVDLCRNGTLCIMQLAFPDAVYLVDAIQGGDVLIKACKPALESTYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLPDDYISFVSLLADPRYCGISYLEKEEVRVLLRQDPKFWTYRPLSELMVRAAADDVRFLLYIYHRMMEKLNERSLWYLAVRGALYCRCFCVNSNDYADWPSLPPVPDKLKADGNGPEEEILSVLDVPPGKMGCVIGKKGATILSIKESCNAEILIGGSKGPPDKVGISASLAM. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03478 326 MobiDBLite consensus disorder prediction 1 15 - -
Seca8g03478 326 Pfam KH domain 277 312 IPR004088 GO:0003723
Seca8g03478 326 CDD Egl_like_exo 48 243 - -
Seca8g03478 326 CDD KH-I 276 323 - -
Seca8g03478 326 ProSiteProfiles Type-1 KH domain profile. 272 308 - -
Seca8g03478 326 MobiDBLite consensus disorder prediction 1 24 - -
Seca8g03478 326 SUPERFAMILY Ribonuclease H-like 23 252 IPR012337 -
Seca8g03478 326 SMART 35exoneu6 35 224 IPR002562 GO:0003676|GO:0006139|GO:0008408
Seca8g03478 326 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 267 322 IPR036612 GO:0003723
Seca8g03478 326 PANTHER EGALITARIAN, ISOFORM B 31 303 - -
Seca8g03478 326 Pfam 3'-5' exonuclease 53 223 IPR002562 GO:0003676|GO:0006139|GO:0008408
Seca8g03478 326 Gene3D - 6 240 IPR036397 GO:0003676
Seca8g03478 326 Gene3D K Homology domain, type 1 261 323 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03478 Seca-Chr8 99621459 99629536 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03478 K18740 - mnt:21402483 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03478 8 99621459 99629536 Seca8g03478 8 99621459 99629536 ECH