Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03934 ATGAAACTCAACCTCTGCATGGCACCACTTCCTTTCTTTTCCTTTCTTTTCCTTCTCACTCTCACCTCCGTTCATTCTCGCTTTGTCGTCGAGAAAAACAGCATCACCGTTCTCTCTCCTCACAAGCTCAGAGGAAAGCGTGATGGCTCCATCGGCAACTTTGGCCTTCCTGACTATGGAGGATTCATCGTTGGCTCACTTGTTCATCCCGACAAAAATTCACATGCCTGTCAAGTCTTTGACGGTGATAAGCCCTTCAAGTTTCAGTCCTATCGCCCAACTATTGTTCTCCTTGATCGCGGAGAGTGTTATTTTGCCTTGAAGGTATGGCATGCCCAGCTAGCTGGAGCTGCAGCGGTTTTAGTGGCTGACAGCATTGAGGAGTCTTTAATAACCATGGATTCTCCTGAGGAGAGCAGTGATGCAGATGGCTACATAGAGAAGATTGTAATTCCATCTGTTTTAGTTGAGAAATCATTTGGTGATGCGTTGAAGGAAGCTTTAAATAACAAAGATGAAGTTTTGCTTAGAATAGACTGGAGAGAGTCTGTACCTCACCCTGATGAGAGAGTTGAGTATGAGTTTTGGACCAACAGCAATGATGAATGTGGAGCTCGTTGTGATGAACAGATGAATTTTGTGAAGAATTTTAAGGGTCATGCTCAGATTCTTGAGAGGGGCGGTTATACCTTATTTACTCCACACTATATAACTTGGTTTTGTCCAAAGCCCTTTGTTCAAAGCAGTCAGTGCAAGTCTCAATGTATAAACCGTGGCAGATATTGTGCCCCCGATCCAGAGAAGGATTTTGGAGAGGGATATGAAGGGAAGGATGTAGTGTATGAAAACTTGAGGCAGCTCTGTGTCCATAGAGTTGCCAATGAAAGCAACCGTTCATGGGTCTGGTGGGATTATGTGACAGATTTCCATGTTAGATGTTCTATGAAGGAGAAAAGATACAGCAAAGATTGTGCTGAAGCTGTCATGAAATCATTAGATCTGCCTATTGAGAAAATTAAGCAATGTATGGGTGACCCTGAAGCGGATGTGGAGAATGAAGTGCTAAAGAATGAGCAACAAGTCCAGCTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTACCAACATTGGTTATAAATAATGTCCAGTATAGAGGAAAATTGGAGAGAACTGCTGTCTTGAAGGCTATATGTTCTGGATTTAAGGAGAGTACTGAACCTCCGGTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGTCTTGAAAGAAATGGAGGATGTTGGCAAGACAAAAGTGCTAACATAACTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTTGCAAAAGGTGTTCAGTATAGGGGTGATGGTTATACATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCTATAAACAATGGAGGTTGTTGGTCAGAAACTAAAAATAAAATAACTTTCTCCGCTTGTTCAGTTCAGCTAAGTGATTTTCCTATTTGTATAAAGGAGTCTGCGGTAAATGGCTGTCACTGCCCAGTTGGGTTTCGTGGTGATGGTTTAAAATGTGAAGATGTTGATGAATGTAAGGAACGAAGTGCTTGTCAGTGTGATGGCTGCAGCTGCAAGAACACTTGGGGCAGTTACGATTGTAAGTGCAAGGGAGATCTTCTATATATAAAGGAGCAAGATATTTGCATTGAAAGAAGTGGATCAAAATTTGGACGGTTCCTTGCCTTTGTGGTCATAGCAGTTGTTGTAGGCGCTGGTGTAGCCGGTTACATATTCTACAAATATAGGCTCCGGTCTTACATGGATTCGGAGATCATGGCTATCATGTCACAATACATGCCACTTGACCAGCAAAATAATGTAGTTCACGCTGAAGCTCAGCCTTTACGACAACAAGGCACGGTTTAA 1926 0.4273 MKLNLCMAPLPFFSFLFLLTLTSVHSRFVVEKNSITVLSPHKLRGKRDGSIGNFGLPDYGGFIVGSLVHPDKNSHACQVFDGDKPFKFQSYRPTIVLLDRGECYFALKVWHAQLAGAAAVLVADSIEESLITMDSPEESSDADGYIEKIVIPSVLVEKSFGDALKEALNNKDEVLLRIDWRESVPHPDERVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVQSSQCKSQCINRGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHVRCSMKEKRYSKDCAEAVMKSLDLPIEKIKQCMGDPEADVENEVLKNEQQVQLGRGSRGDVTILPTLVINNVQYRGKLERTAVLKAICSGFKESTEPPVCLSGDIETNECLERNGGCWQDKSANITACKDTFRGRVCECPVAKGVQYRGDGYTSCEAFGPARCSINNGGCWSETKNKITFSACSVQLSDFPICIKESAVNGCHCPVGFRGDGLKCEDVDECKERSACQCDGCSCKNTWGSYDCKCKGDLLYIKEQDICIERSGSKFGRFLAFVVIAVVVGAGVAGYIFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAEAQPLRQQGTV. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03934 641 ProSitePatterns Calcium-binding EGF-like domain signature. 527 553 IPR018097 GO:0005509
Seca6g03934 641 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 14 626 - -
Seca6g03934 641 Pfam PA domain 65 164 IPR003137 -
Seca6g03934 641 FunFam vacuolar-sorting receptor 1 410 466 - -
Seca6g03934 641 CDD EGF_CA 527 556 - -
Seca6g03934 641 Gene3D - 25 187 - -
Seca6g03934 641 Gene3D Laminin 489 569 - -
Seca6g03934 641 Gene3D Laminin 410 466 - -
Seca6g03934 641 SMART egfca_6 527 569 IPR001881 GO:0005509
Seca6g03934 641 SUPERFAMILY PA domain 94 174 IPR046450 -
Seca6g03934 641 FunFam Vacuolar-sorting receptor 1 25 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03934 Seca-Chr6 107015473 107021919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03934 8 638 Miscellaneous Gene Families AT1G30900 68.304 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03934 - - gmx:100790467 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03934 6 107015473 107021919 Seca6g03934 6 107015473 107021919 ECH