Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03928 ATGGCTTCTTCTTTTCCTCTTTATCAGCCAACGCACTGCTTCTTCTCCACGACCCAGTTCCAAGGTTTGCGCCATGGCTTCTTGTGGCGACCCACTTACTCATTTGGCCCTCATATTGAAAACAAAGCACGACCCGTCAAAGCTTCTGTTGATGCACCTCCATTTCCCTTGTTTCAACCTCCCAAAATTGAAGAGTCATCGTCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGTTATGTCCGAAGCATGAGAGCTTATGGAATTGATTTTAAGGAAGGGCCAGATGGTTTTGGTGTCTATGCTTCCAAAGATGTAGAACCTCTTCGCCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACAATAAGCAAGAAGCTCCCATGGATGTTTTTCCCGGATATAATTCCCATTGGTCATCCAATATTTGACATTATCAACTCGACAAATCCAGAGACAGATTGGGACTTAAGGTTAGCATGCCTTCTCTTATTTGCATTTGACTGCAAAGACAACTTTTGGCAGTTATATGGTGACTTCTTACCAAGTGCAGATGTGTGTCCTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAGTCTTGCTTCTATTATGAGAAACCAGCAACAACGAGCCTTAGAATTCTGGGAGAAAAACTGGCATAATGGTGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATTTGGGCAGTAGGTATTGCACAATCACGATGTATTAACATGCAAATGAGAGTTGGTGCATTAACTCAAAATGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCGAATTGTTTTTTCCACTGGCGTTATAAGGATCGGATGCTTGAGGTTCTTATAAATGCTGGACAGCGGATCAGAAAGGGAGATGAGATGACAGTTAATTACATGAACGCGCAGAAGAATGACATGTTAATGCAAAGATACGGATTTTCATCACCTGTGGTAATTTTCTTTCCATTTAAATCTTGA 1050 0.419 MASSFPLYQPTHCFFSTTQFQGLRHGFLWRPTYSFGPHIENKARPVKASVDAPPFPLFQPPKIEESSSELEPADPDFYKIGYVRSMRAYGIDFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLFAFDCKDNFWQLYGDFLPSADVCPSLLLATEEELLELQDPSLASIMRNQQQRALEFWEKNWHNGAPLKIKRLARDPQRFIWAVGIAQSRCINMQMRVGALTQNANMLIPYADMLNHSFEPNCFFHWRYKDRMLEVLINAGQRIRKGDEMTVNYMNAQKNDMLMQRYGFSSPVVIFFPFKS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03928 349 CDD SET_LSMT 90 337 - -
Seca6g03928 349 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Seca6g03928 349 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Seca6g03928 349 Pfam SET domain 99 322 IPR001214 GO:0005515
Seca6g03928 349 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 67 340 - -
Seca6g03928 349 SUPERFAMILY SET domain 98 338 IPR046341 -
Seca6g03928 349 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03928 Seca-Chr6 106963257 106970710 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g03928 SET 8.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03928 - - gmx:100786962 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03928 6 106963257 106970710 Seca6g03928 6 106963257 106970710 ECH