Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09619 ATGGAAAATCATTTCTACTACTCTCCCTACAGCCCTACCAACTACAGAGTGGGATTGGGAACAGCAGCACCATCTCCCACCCGATTCCTGAACTCCAATACCATGTTCCTCTCCCACCACCACCACCGCACGGATGCCGCCACCGCCGCCGCTCTCCGCTACTCCGCCGCCGTGGACGACATAGACATTGGCCCGCCTGGAGTTGCTTCCAGAATCCCCTCTTCTACAACCGCCAACTTGCTCTCTCAAACTTCTCCTTGGTCTTCCGCCATCGCCGCGGCAAATGTCGGCCATACTGCACTTGACCTGAAACGCTCTTCTGACGCGCTCTACCATCCGACCATTTTGAGTACAATTGGGCAAAGTGAAGCCTGGTATACTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGGAAGCAATATGCCTATATATCCACAGAGGCCAGGGGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGCCCCAAATATTGCTACAAGTGAAACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCATATTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAAGGGTTCCTCTGAAAATGCTGATGTTTCTGGCTTACCTGAAAGGCCACTAGAGCCCCCTTGTGCGTTCTACATGAAAACTGGAATATGTAAATTTGGTGCTGCATGCAAATTCCATCACCCCAAGGATATTCAGATTCAGTTGTCTGATGAAACGAGTCGTATTGTTGAGCTGACACAAACAAATTCTATGTTGGAGGGGGCAACAGGAGATACACAACCAATTAAGCCTCTTATATCTCCATTGTTGCATAATAGCAAAGGGCTTCCTGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGAATGTAATTAATCCGCCTATTGCTGCATTAGGCCCTTCTGTTTTGGCATCCTCAGCTGCTAATCTGAACATTGGAGTTATTAATCCAGCTACATCTGTTTATCAAGCTTTCGACCCCAGGCTGTCAAATCCAACGTCTCAGACGGGAGTAGCAGAGACTATCTATCCTCAACGGCCAGGACAAATTGAGTGCGATTACTATATGAAAACTGGTGACTGTAAATTTGGGGAAAGATGCAAGTTCCATCACCCAATTGATCGCTCAGCACCATTGCTGTCAAAGCAGGCTCCACAACAAACTGTTAAACTCACTCCTGCAGGACTTCCAAGAAGAGAGGGTGCTGTGATCTGTCCATATTATTTGAAAACTGGCACGTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAACATCTGCAACTAATGGAGAGGAAGCAAAAACCAATTAA 1530 0.4693 MENHFYYSPYSPTNYRVGLGTAAPSPTRFLNSNTMFLSHHHHRTDAATAAALRYSAAVDDIDIGPPGVASRIPSSTTANLLSQTSPWSSAIAAANVGHTALDLKRSSDALYHPTILSTIGQSEAWYTTNSLAKRPRYESGSNMPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEAPNIATSETLPERPGEPDCPYFLKTQRCKFGSRCKFNHPKGSSENADVSGLPERPLEPPCAFYMKTGICKFGAACKFHHPKDIQIQLSDETSRIVELTQTNSMLEGATGDTQPIKPLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPIAALGPSVLASSAANLNIGVINPATSVYQAFDPRLSNPTSQTGVAETIYPQRPGQIECDYYMKTGDCKFGERCKFHHPIDRSAPLLSKQAPQQTVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSATNGEEAKTN. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09619 509 PANTHER PROTEIN PHOSPHATASE RELATED 132 278 - -
Seca4g09619 509 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Seca4g09619 509 SUPERFAMILY CCCH zinc finger 323 347 IPR036855 GO:0046872
Seca4g09619 509 SUPERFAMILY CCCH zinc finger 407 434 IPR036855 GO:0046872
Seca4g09619 509 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Seca4g09619 509 ProSiteProfiles Zinc finger C3H1-type profile. 458 486 IPR000571 GO:0046872
Seca4g09619 509 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Seca4g09619 509 SUPERFAMILY CCCH zinc finger 150 176 IPR036855 GO:0046872
Seca4g09619 509 SUPERFAMILY CCCH zinc finger 247 270 IPR036855 GO:0046872
Seca4g09619 509 Gene3D - 404 500 - -
Seca4g09619 509 Gene3D - 148 239 - -
Seca4g09619 509 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Seca4g09619 509 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Seca4g09619 509 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Seca4g09619 509 SMART c3hfinal6 201 228 IPR000571 GO:0046872
Seca4g09619 509 SMART c3hfinal6 405 432 IPR000571 GO:0046872
Seca4g09619 509 SMART c3hfinal6 458 485 IPR000571 GO:0046872
Seca4g09619 509 SUPERFAMILY CCCH zinc finger 462 485 IPR036855 GO:0046872
Seca4g09619 509 FunFam zinc finger CCCH domain-containing protein 37 403 499 - -
Seca4g09619 509 Gene3D - 240 354 - -
Seca4g09619 509 SUPERFAMILY CCCH zinc finger 206 229 IPR036855 GO:0046872
Seca4g09619 509 ProSiteProfiles Zinc finger C3H1-type profile. 405 433 IPR000571 GO:0046872
Seca4g09619 509 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 408 431 IPR000571 GO:0046872
Seca4g09619 509 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 175 IPR000571 GO:0046872
Seca4g09619 509 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 345 IPR000571 GO:0046872
Seca4g09619 509 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 462 485 IPR000571 GO:0046872
Seca4g09619 509 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 228 IPR000571 GO:0046872
Seca4g09619 509 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 269 IPR000571 GO:0046872
Seca4g09619 509 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09619 Seca-Chr4 226645066 226653902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09619 317 500 C2H2 Transcription Factor Family AT3G02830 37.297 4.58e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g09619 zf-CCCH 1.6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09619 - - gmx:100801417 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09619 4 226645066 226653902 Seca4g09619 4 226645066 226653902 ECH