Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09611 ATGACACAGCCATCGGTGCCCTCGCCTCCGCCGCCGCTTCCGCAACCGCCTCCGACCACTGCTCCGCCGCCCAAGCCGGCCGAGGTCCGCGTCCGCTGCGCCGGCTGCCGCATGATCCTGAGCGTGGCGCCCGGGATGACCGAGTTCGCATGCCCTACCTGCCGAATGGCGCAGATGCTTCCCCCTCAGCTCATGGCCAGGGCTCACCAGTCCTCACCGCCGCCGGCGCTGCCTCCTCTTACGGCGGCTCCGCCAACGCAGGTCCCGCCGCAGCACGTGCCGGCACATGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCTTGCAAGGCCCTCCTCAACGTTCCTCATGGCCTCGCGCGCTTCGCTTGCCCCCAATGTGGTATTGAGCTCGCCGTCGATCTCAACAAGATCAAGCAGTTCTTCCCCTCGCCTCCTCCCGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGCGTGATGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAAATTATCAACCACCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGGCTGCAGTGCAGCCACCTGAGCCAACTTATGATCCAAAAACTAAAGATAATTTGGAAAGTTCAAAAGCTTTGTCATGCTTGCAAATTGAAACTTTGGTCTATGCTTGTCAGAGACACCTTCAACACCTCCCTAGTGGAGCTAGGGCAGGATTCTTTATTGGAGATGGTGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGTCTAATTTGGGAGAACTGGCACCACGAAAGGAGAAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATGTCGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTCTTGACGTACAATAGCCTCATAGCATCTTCTGAGAAAGGTCGTTCTCGTCTCCAACAGCTTGCACAGTGGTGTGGACCAGGGTTTGATGGTCTTGTAATTTTTGATGAGTGTCACAAAGCAAAGAATTTGGTCCCTGAATCTGGTAGTCAGCCAACACGAACTGGAGAAGCAGTACTTGAAATCCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCAACTGGTGCATCTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGCTGGGACTTCTTTCTCTGATTTCCGTGAATTTCTAGGTGCTCTTGATAGAGGGGGTGTTGGAGCTCTGGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACACTTAGCTATGAGGGTGCTGAGTTTGAAGTTATTGAAGCTCCATTAGAAGATAAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTGTCAGCCAGTGCCTTCTTAAACGATAAACCTAATTCTAGTCAACTGTGGCGATTGTACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTGAGACTAGCGAAACAAGCATTAATTGAAGAAAAGTGTGTAGTCATTGGTCTTCAGAGTACTGGAGAGGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCATTACCTGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTTAAGGAACTCCAACGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGAAGGGTCAGAAAAGTAGCTAAGTGGCAACCTCCAAGTGACGCTGAAAGTGATGAAGAATCTGAAACTGACTCTGGTGTTGAATCTACGGACTCTGATGATGAGTTTCAGATATGTGAAATTTGCACTACTGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCTTGCTGTGGTAAATTGGTCCACTCCACATGCTTGATGCCACCAATTGGTGATATAGTTCCTGAAGAATGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCAAGCAAGACAGGCCTACATAGCTGAACTCCAGAAGAGGTATGATGCAGCCTTGGAACGTAAGACAAAAATATTAGAGATAATTCGTTCTTTGGATCTTCCAAATAATCCTTTGGATGATATTATTGACCAGCTAGGAGGTCCTGATAAAGTTGCAGAGGTGACAGGAAGGAGAGGCATGCTTGTGAGGGCCACTACTGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAGGATGTCACTATGGAAATGGTTAACATGCACGAAAAGCAGCTATTTATGGATGGTAAAAAGTTAGTTGCAATTATCTCTGAAGCTGGATCAGCTGGTGTTTCATTGCAGGCAGATAGAAGGGCCACAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCTGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACTAATCTTGGTGGAGAACGACGATTTGCATCAATTGTTGCAAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGACCTTCATTAAGCGCTTATAATTACAATAGTGCTTATGGAAAGAGGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTACCTGTTGTACCTCCGGGGTGTTCATCTGACAGACCGGATACAATTCAAGATTTTATTATTCAGGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTTAGAGACACAATTCTTGGTAATGGTAAAGATCTTGGAAGGTTATCTGGTCGCATTATTGATTCAGATATGCATGAAGTCGGACGATTCCTCAACCGCCTTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTCATTCGGAATGCTCGCATTGAAGGTAACCTTGACTCTGGCATTGTTGACTTGAAAGCTAATGTCATTGAACTACAGGGGACTCCAAAGACAGTTCATGTTGATCAAATGACTGGAGCCTCAACAGTTCTGTTTACATTTATCTTGGATCGTGGGATCACATGGGAGGTGCTTGTTCTTTTGTTTGACCCAACTAATGGTGTGCTTTATTTGGACAAACTTAACTTGCGGACTTATTATTTACTGTTTACTTGTCAGTTGGCAAGTAACATGCTGAATGAAAAGCAAAAGGATAGTCTTGGTTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCTGGTATGTATAAGATAGTTCGTCCCCCCGTTGGAGAATCAAACCGGGAGATGCCTTTGTCTGAATTAAAAAGTAAATATAGAAAAATTTCATCTTTAGAGAAAGCTCAAACTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAGGATTGGCAACTTTTGTACAGTGGGCAGAAGACTACAGGAAGTAAACGTCTTGGGCGGCCTCATTCTTCCTGTTTGGGGAACCGTAGAAAAGGCCCTTTCTAAGCAGGCCCGCCTAAGCCATAGGAGGCTACGTGTAGTACGCATTGAAACTACTGGGGATAATAATCAACGTATTGTTGGGCTTCTTGTTCCTAATGCAGCTGTTGAAACTGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3885 0.4535 MTQPSVPSPPPPLPQPPPTTAPPPKPAEVRVRCAGCRMILSVAPGMTEFACPTCRMAQMLPPQLMARAHQSSPPPALPPLTAAPPTQVPPQHVPAHGIDPTKIQLPCASCKALLNVPHGLARFACPQCGIELAVDLNKIKQFFPSPPPEEVNEVAVEVERDEDEGGMVGETFTNYQPPKVSIGPPHPDPVVETSSLAAVQPPEPTYDPKTKDNLESSKALSCLQIETLVYACQRHLQHLPSGARAGFFIGDGAGVGKGRTIAGLIWENWHHERRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFLTYNSLIASSEKGRSRLQQLAQWCGPGFDGLVIFDECHKAKNLVPESGSQPTRTGEAVLEIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGAGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALIEEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESETDSGVESTDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKILEIIRSLDLPNNPLDDIIDQLGGPDKVAEVTGRRGMLVRATTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRATNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYNSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDRPDTIQDFIIQAKAALVSVGIVRDTILGNGKDLGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLIRNARIEGNLDSGIVDLKANVIELQGTPKTVHVDQMTGASTVLFTFILDRGITWEVLVLLFDPTNGVLYLDKLNLRTYYLLFTCQLASNMLNEKQKDSLGSANDGFYESKREWLGKRHFILAFESSASGMYKIVRPPVGESNREMPLSELKSKYRKISSLEKAQTGWEEEYEVSSKQCMHGPNCRIGNFCTVGRRLQEVNVLGGLILPVWGTVEKALSKQARLSHRRLRVVRIETTGDNNQRIVGLLVPNAAVETVLQGLAWVQEIDD. 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09611 1294 MobiDBLite consensus disorder prediction 629 658 - -
Seca4g09611 1294 Pfam P-loop containing NTP hydrolase pore-1 185 485 IPR039187 -
Seca4g09611 1294 Gene3D - 212 415 IPR027417 -
Seca4g09611 1294 ProSiteProfiles Zinc finger PHD-type profile. 662 712 IPR019787 -
Seca4g09611 1294 MobiDBLite consensus disorder prediction 1 27 - -
Seca4g09611 1294 MobiDBLite consensus disorder prediction 66 97 - -
Seca4g09611 1294 ProSitePatterns Zinc finger PHD-type signature. 665 709 IPR019786 -
Seca4g09611 1294 SMART PHD_3 664 710 IPR001965 -
Seca4g09611 1294 FunFam Protein strawberry notch homolog 2 216 416 - -
Seca4g09611 1294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 734 IPR013083 -
Seca4g09611 1294 MobiDBLite consensus disorder prediction 642 658 - -
Seca4g09611 1294 SUPERFAMILY FYVE/PHD zinc finger 655 715 IPR011011 -
Seca4g09611 1294 Pfam C-terminal domain on Strawberry notch homologue 753 1042 IPR026937 -
Seca4g09611 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 428 IPR027417 -
Seca4g09611 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 808 913 IPR027417 -
Seca4g09611 1294 PANTHER STRAWBERRY NOTCH-RELATED 25 1288 IPR026741 GO:0006355
Seca4g09611 1294 MobiDBLite consensus disorder prediction 1 25 - -
Seca4g09611 1294 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09611 Seca-Chr4 226541529 226578671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09611 K26273 - gmx:100808670 2219.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09611 4 226541529 226578671 Seca4g09611 4 226541529 226578671 ECH