Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01324 ATGTGTTTCCACAACGACGAAGCGGTCCAGTCTCCGGTTCTCGAAACCATGCTGACAGAAAGTGAAATACAATACCTCTTTTCCCTCATTAATCATCAATCCACAGAACCGGCCAGCCCAGGCTCCGGTTCACAGGGATCGAACCGGGCGGTTTACTCAACAGAGGAAAGAAAGCTCAGGCGCATGCAATCGAACCGGGAATCGGCCCGACGGTCCAGGTGCAGAAAGAAGAAGCATTTAGAGAACCTCACGAACCAAGTGAACCGTTTGAGAATTCAAAACCGAGAACTCAAAAACCGATTAGCCTTCACCATGCATCAGCATCTCCTCCTATCCCTACAGAATGATCAACTAAGATCCGAATCCGTTAACCTTCTGGCCAAACTTTCGGATCTATGTGGGATTTTAAATAGTATGCTTTCACAATAG 429 0.4732 MCFHNDEAVQSPVLETMLTESEIQYLFSLINHQSTEPASPGSGSQGSNRAVYSTEERKLRRMQSNRESARRSRCRKKKHLENLTNQVNRLRIQNRELKNRLAFTMHQHLLLSLQNDQLRSESVNLLAKLSDLCGILNSMLSQ. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01324 142 Pfam bZIP transcription factor 56 101 IPR004827 GO:0003700|GO:0006355
Seca4g01324 142 MobiDBLite consensus disorder prediction 53 69 - -
Seca4g01324 142 Coils Coil 80 107 - -
Seca4g01324 142 PANTHER BZIP TRANSCRIPTION FACTOR 44 38 139 - -
Seca4g01324 142 MobiDBLite consensus disorder prediction 34 75 - -
Seca4g01324 142 SUPERFAMILY Leucine zipper domain 57 109 IPR046347 GO:0003700|GO:0006355
Seca4g01324 142 Coils Coil 52 72 - -
Seca4g01324 142 CDD bZIP_plant_GBF1 58 108 IPR045314 GO:0003700|GO:0006355
Seca4g01324 142 MobiDBLite consensus disorder prediction 34 52 - -
Seca4g01324 142 Gene3D - 55 108 - -
Seca4g01324 142 FunFam BZIP transcription factor 55 107 - -
Seca4g01324 142 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Seca4g01324 142 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 102 IPR004827 GO:0003700|GO:0006355
Seca4g01324 142 SMART brlzneu 53 117 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01324 Seca-Chr4 21212174 21212602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01324 12 136 bZIP Transcription Factor Family AT3G49760 40.458 1.06e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g01324 bZIP_1 1.2e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01324 - - gmx:102661984 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01324 4 21212174 21212602 Seca4g01324 4 21212174 21212602 PCT