Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01318 ATGGATCTTGGGGCGGTGGGTTTGGATGGGTTGGTGGGTTCAGACACTGGTTTTGTTCCTCTTGCTTCTACAGATCCTGAAACTAAGCACAGTAAGTGGTACGGATCTGGGTTCCTTAAGCAACAGAGATCTGCCATCACTGAAGATGAGTGGAGGAGTTCCAAACTGGCTAAGACTGATGACATTTCTGCTTCCAAAGCAATGCTTTTCCAGAACAAGAACTCCTTACTGAGATCTAATGCTACTCTCTTTTCTGATGGTCAGCACCAACAACAAATGCTGAGTTTCTCTTCTCCAAAGTCAGAGTCTTTGTTAGTGGAAAAGAGCCCCCAAAATGTCACATTTCCATATTCTTTCCACCCATTGTCTAGTTACAACAGAAATACAGGTTACAATTCTGGAAGCATGCATGGGATGGTAACAGGGGCAAGAGGGCCATTCACTCCTTCTCAGTGGATGGAGCTAGAACACCAGGCCCTGATCTACAAATACATAACATCAAATGTTCCTGTACCATCTCATCTTCTCATCCCCATCAAGAAAGCACTTGAATCTGCTGGCTTCTATAACTTGTCAACTGGTCTTTTGAGACCCAATGCCATGGGGGGATGGGGAGGTTTCCATCTGGGGTTCTCGAATAACACAGATCCTGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCAAGAGATGCCGTTGTGGACCAAAAGTATTGTGAACGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACTGTGGGGACCACCAACACCACCAACAGCAACACGGTTCCCTCAACCACTGTATCCACCTTTGCACAACATCATCAACAACCACCTAAGAATATGCACCCTCTTGCATCTGATACCTCTTCGCCTAACAACATCAATAGGATGTTTATGAATAACAAGGAGAATGGCAGTGAGAGAATCCCTGAGGCTAATGATGCCCTTCCAATGTTGCCTGCTACACTTGAGCTGAAACACAAGGAAAATCACCCTTTTATGATTCATAAACAGCAAATCCAATATGAAGAAGAGTCATCAAGGAATGAGTTTGGGCTTGTCACATGTGATTCCTTACTTAACCCTTCTCAGAAAAGCAGCTCTACTTTGCTTAGCAGCAGAGGCTTTGGTTCATCAACTAACAGAGAAACTGATTCAGAACAACATTCCCTTAGGCAATTCATTGATGACTGGCCTAAAACTCAGTCTAATCATAGCTCATGGCCAACAGAACTTGATGTGCAACAAGAGAGGACTGAACTCTCAATTTCCATCCCAACAGATTTCATGTCATCAACTTCCTCTCCCACCAATGACAAAGTCACATTGTCACCTTTAAGGCTATCAAAGGAGTTAGACCCAATTCAAATGGGTTTGGGTGTTGGAAACAATGCTTCTTCTATCAATGAGCCAAACTGTACTAGGCATCAAGGTAGTAATTGGATTCCAATTGCTTGGGAGAGTTCTATGGGTGGTCCTCTTGGAGAGGTTCTCAATCTTAGCAATAACAATGCAAGTGATCACTGTAATGTTAAGAATTCCTCTGCTCTTAACCTCATGACTGATGGGTGGGACAATAGCCCCCCATTAGGGTCCTCTCCAACTGGGGTTTTGCAAAAAGCAACATTTGTATCTTTATCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAGAATAAGGCACAAGAAGGAGCCAGCTTGTGCAATGACCTCCTTGGTTCAACTCTATAG 1782 0.4467 MDLGAVGLDGLVGSDTGFVPLASTDPETKHSKWYGSGFLKQQRSAITEDEWRSSKLAKTDDISASKAMLFQNKNSLLRSNATLFSDGQHQQQMLSFSSPKSESLLVEKSPQNVTFPYSFHPLSSYNRNTGYNSGSMHGMVTGARGPFTPSQWMELEHQALIYKYITSNVPVPSHLLIPIKKALESAGFYNLSTGLLRPNAMGGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVTVGTTNTTNSNTVPSTTVSTFAQHHQQPPKNMHPLASDTSSPNNINRMFMNNKENGSERIPEANDALPMLPATLELKHKENHPFMIHKQQIQYEEESSRNEFGLVTCDSLLNPSQKSSSTLLSSRGFGSSTNRETDSEQHSLRQFIDDWPKTQSNHSSWPTELDVQQERTELSISIPTDFMSSTSSPTNDKVTLSPLRLSKELDPIQMGLGVGNNASSINEPNCTRHQGSNWIPIAWESSMGGPLGEVLNLSNNNASDHCNVKNSSALNLMTDGWDNSPPLGSSPTGVLQKATFVSLSNSSAGSSPRAENKAQEGASLCNDLLGSTL. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01318 593 PANTHER GROWTH-REGULATING FACTOR 5 88 449 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca4g01318 593 Pfam QLQ 146 179 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g01318 593 Pfam WRC 217 259 IPR014977 -
Seca4g01318 593 ProSiteProfiles WRC domain profile. 216 260 IPR014977 -
Seca4g01318 593 MobiDBLite consensus disorder prediction 379 401 - -
Seca4g01318 593 MobiDBLite consensus disorder prediction 249 281 - -
Seca4g01318 593 MobiDBLite consensus disorder prediction 379 406 - -
Seca4g01318 593 ProSiteProfiles QLQ domain profile. 146 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g01318 593 SMART QLQ_2 145 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g01318 593 MobiDBLite consensus disorder prediction 264 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01318 Seca-Chr4 20972216 20976092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01318 35 560 GRF Transcription Factor Family AT2G22840 42.336 2.89e-104 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca4g01318 WRC 5.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01318 - - aprc:113865097 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01318 4 20972216 20976092 Seca4g01318 4 20972216 20976092 ECH