Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01312 ATGGGTGATCTTGAAAATGCTATGGCCATGGGGCTTCAACATGGAAAGGAGGGCATTGTGAATTGTCCACTATCAGGTTTGAGGACAAGTGTTTCAGAAATGACCATTAGTTCTGTGTCTTTGGCTATGCCTTCAGGCTTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGGATCCTCTTGTTTCCTTGAATCAGATTCAAACTCTTAGAGGCTCTCCAATGGTTTCTCATAGTGAGTTTTCCAATTCATCTTACCCTCTTGTTTTGAAAAACCAGGGAATGAGTAGCAACTCCCTCATTGTTCAACATGTGTCTGATTCAAATCTTGTGGACATGGTCCCCAATGTTCCCTCCTATGGAAGTGGTAACTTCTCAGAAATGATTGGCTCCTTTGGCCAAACTGGGTCAGGTGATATAGCTAACACAGTGTATCAACCAAATTGTTATCCAAGCAATGTATCAGCCAAACTGGGTCCTATGAATAATGAGCAATCTCAAGGTGAAGGTTCAACTCCTGAAGAGGGAGAAACAGGATCTGCACTTGATGAAAATAGAAGAAAGCGTGGACTTGACTATAATTCTACTTTCAGTCCAAATAAGGTATATGCTGAGGGGGATGCAATTGAAGATTCTTCTGGGAAGAGTTTTGATGGTGTGAAAGATCAATATGAAAAGAAACCAAAAGTTGAACAAAATAGTAGTGCAAATTTGCGTGGTAAACAATTGCTGAAGCAAAAGAAAGATGAGTCTCACAGTGGAGATGCTCCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCCACAAACAGTCACAGCCTTGCAGAAAGGGTTAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACGGGTAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCATAGTAAACCCAGAGCTGAATTTTGATGCAGAGCGGATCCACTCCAAAGATGTTCACCGGTCACGCAATGGACATGGACCTGTTAGTGGATATGGTCCTGGTATCAACTACTCTCATCCATTCCCTTCTAGAAGTTTCCAGGGAACACTAGCGGCCATGCCCAGCACTTCAACACAATACCCTCCTTTGTCACAGCCTGTTTTGAACCACGAGTTCCAAAGCCTTTATGGAATGACCTATGATTCCAGTTCAACTCTTGACAATTTGGGATCCGATGGATGGTTGAAAACAGAGTTATAG 1293 0.423 MGDLENAMAMGLQHGKEGIVNCPLSGLRTSVSEMTISSVSLAMPSGLANPFLASSAWDPLVSLNQIQTLRGSPMVSHSEFSNSSYPLVLKNQGMSSNSLIVQHVSDSNLVDMVPNVPSYGSGNFSEMIGSFGQTGSGDIANTVYQPNCYPSNVSAKLGPMNNEQSQGEGSTPEEGETGSALDENRRKRGLDYNSTFSPNKVYAEGDAIEDSSGKSFDGVKDQYEKKPKVEQNSSANLRGKQLLKQKKDESHSGDAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLAIVNPELNFDAERIHSKDVHRSRNGHGPVSGYGPGINYSHPFPSRSFQGTLAAMPSTSTQYPPLSQPVLNHEFQSLYGMTYDSSSTLDNLGSDGWLKTEL. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01312 430 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 164 380 IPR024097 GO:0006355
Seca4g01312 430 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Seca4g01312 430 Gene3D - 266 338 IPR036638 GO:0046983
Seca4g01312 430 MobiDBLite consensus disorder prediction 154 173 - -
Seca4g01312 430 MobiDBLite consensus disorder prediction 241 264 - -
Seca4g01312 430 FunFam Basic helix-loop-helix transcription factor 266 338 - -
Seca4g01312 430 MobiDBLite consensus disorder prediction 224 281 - -
Seca4g01312 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Seca4g01312 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
Seca4g01312 430 MobiDBLite consensus disorder prediction 154 198 - -
Seca4g01312 430 CDD bHLH_AtBPE_like 259 344 - -
Seca4g01312 430 SMART finulus 275 325 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01312 Seca-Chr4 20808259 20811746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01312 10 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 38.118 4.98e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g01312 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01312 - - gmx:100801930 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01312 4 20808259 20811746 Seca4g01312 4 20808259 20811746 ECH