Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01306 ATGTTGTCTAGGAAGGTTAGTCATGACTCTCATGGCCAAGACTCTTCTTACTTTCTTGGATGGCAAGAGTATGAGAAGAATCCTTATCACTCCATTCATAATCCAACTGGAATCATTCAGATGGGACTTGCTGAGAATCAGCTATCATTTGACCTTCTTGAATCATGGCTTCGAAGAAATCCTGATATAGTGGGGTTGAAGAGAGATGGGGTATCCGTATTTAGAGAACTTGCTCTATTCCAGGACTACCACGGCTTACCTGCTTTCAAAAATGAACTGGTGGACTTTATGTCAAAAATAAGAGGAAATAGAATCAAATTTGAGTCGGAGAAGCTTGTCCTTACAGCTGGTGCAACTCCCGCAAATGAGATTCTTATGTTTTGTCTTGCTGATCCAGGGGATGCTTTCATTCTTCCCACACCCTATTATCCAGGGTTCGATAGAGACCTCAAATGGCGAACCGGAGTTGAGATTGTTCCCATGCATTGCTCCAGTTCAAACGGTTTCAGAATAACTTCCTCTGCTTTAGAACAAGCCTATCAACAAGCACAAAAACTGAACCTCAACGTCAAAGGTGTATTAGTAACTAACCCCTCAAATCCACTAGGCATAACCATGACCAAAACAGAACTTAACCACTTGGTTAACTTTGCAATTGACAAAGGCATTCATATAATAAGCGACGAAATCTACTCAGGAACAGTCTTCGACTCACCCAAATTCGTAAGCATCATGGAAGTAGTAAACGACAGAAGTTTCGACAACAACGCTACCATTTTGAACCGCATTCACGTCGTTTATAGTCTCTCAAAGGACCTTGGCGTGCCAGGGTTTCGTGTAGGAATGATTTATTCCAATAACGAAATTGTCGTTGCTGCTGCTACCAAAATGTCAAGCTTTGGACTCGTTTCGTCGCAAACTCAGTATTTGCTTGCTAATTTGCTCTCAGACAAGAAATTCACTTTGAAATACATGGAGGAGACTCAGAGGAGGAAACAACCCAGCAATGTTAAAGTTTACTTTGGAAGAAGGCTAGCCACTCATCGTTCAAAAAGCCATGATCTTTGCTTGGAAAGATTTGTTCCGTCTCCTACATGGGTAATGAAAGCATGGGAAACAACTCAAGATGAGATACTGACTATCGGTGGCTTGGATGCTGTGGTTTTTTGCAGGATGCTTGTGTTCAGTATCCGAGTATTTTCTGTTGCTGCTATCATCTGCATTGCTCTAGTGCTTCCTGTGAATTACTATGGTCAGGAAAGAATACATAAGATTATACCTTTTGAGTCACTGGAAGTGTTTACCATTGAGAATGTCAAGGAAGGATCCAGGGGGCTTTGGGCTCATTGTCTCGCATTATACATCATAACTTTGACAGCTTGTTCTCTTCTTTACTTCGAATTTAGGAGCATTACTAATTTGCGGCTAGTACATATCACTGGATCACCGCCAAATCCAAGTCATTTTTCAATTCTTGTCAGAGGAATACCCTGGTCTTCAAATGAATCATACTTAGACGTAGTAAAAAAATTTTTCTCATACTACCATGCGTCAACATATTTGTCACACCAAATAGTGTATAAGTCCGGCGCAGTTCAGAAACTGAAGGATGATGCAGAATATGCATGTAGGATGCTCAGTGGTGGTTTGGAACAGACTTGTAAGCCAAGCTTTGCGCAATGTTATTTTTGTGGAGGATCCACAAATTTTAAGATTATTTCTAATGAAATAGATAGTATACATGCAAGAACGGGCTACCGTGACATTCATATAGATGCAGGAAAGAAGGAATGCGCAGCTGCTTTCGTATTCTTTAAAAGTCGGTATGCTGCACTTATGGCTGCCAAAAATCTTCAAACATCAAATCCTATGTTATGGGTCACAGACCAAGCTCCTGAACCACATGATGTTTACTGGTCCAACCTTTGCATACCATACAGGCAACTTTGGATCCGTAAGATAGCTACATTTGTGGCTTCTATCACCTTTGTGCTTGTATTCCTTATCCCTGTCACATTCGCACAAGGCTTGACTCAACTAGACAAGCTTCAGAAAATGTTCCCTTTTCTGACAGGGATACTTCAAAAGAAATTTATGATTCAGCTGGTGACTGGTTACTTGCCAAGTGTGATTTTGGTTTTATTTTTATATGCTGTTCCACCATTGATGATGCTATTTTCAGCAGTGGAGGGGTCTATTTCCCGTAGTGGAAGGAAGAAAAGTGCATGCTACAAAGTTTTGTACTTTTCAATTTGGAATGTGTTTTTTGTTAATGTTTTTGCCGGGTCTGTTATCAGCCAACTCTCAGTCTTTACTAGTATAACAGAACTACCTGCCCAACTTGCGAAGGCAGTCCCAGCACAGGCTACCTTCTTCACAACGTATGTTTTATCATCTGGTTGGGCAAGTTTGTCATTTGAAATTATGCAACTATTTCCTCTATTCTGCAATATGTTCCAGAGGTTGGTACTCTGTTCCAAGGAGGATTCACTGGATGGCGCCCTAACTTTTCCATACCATACAGAAGTTCCAAGGGTCTTACTGTTTGGATTCCTTGGATTTACCTGTGCTATTCTGGCACCCCTAATACTACCCTTCTTATTGTTTTACTTTTTCCTTGCATACCTCGTTTACCGAAACCAGATTATCAATGTGTATATTACAAAATATGATGGTGGGGGACACTTATGGCCCATTGCTCACAACACAACGGTCTTCTCATTGGTCTTCGCTCAAGTAATTGCACTTGGGGTGTTTGGACTAAAACGCTCAACAGTTGCATCTGGATTTACCATTCCACTGCTGATTGGTACCATTCTATTTCACCAATACTGTAGGCAGCGATTTCTCCCAGTATTTAAGAACAATGCAGCGCAGGTTCTTATTGACATGGATAGGAGGGATGAGCTTTGTGGTAGGATGGAAGAGATTTATGAACAATTGCGTTCAGCCTATGGCCAGTTCACTGGTTCTAGTCAATCTGAATGTTCCAGTACTCATCGAGACGACAGGGACCGTGTTCGGACTCCAGAAGATATGGAGACAGGCAAGGAAATGAGACGACAAGATTTATCATGGCCAGTGTAG 3087 0.4133 MLSRKVSHDSHGQDSSYFLGWQEYEKNPYHSIHNPTGIIQMGLAENQLSFDLLESWLRRNPDIVGLKRDGVSVFRELALFQDYHGLPAFKNELVDFMSKIRGNRIKFESEKLVLTAGATPANEILMFCLADPGDAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSSALEQAYQQAQKLNLNVKGVLVTNPSNPLGITMTKTELNHLVNFAIDKGIHIISDEIYSGTVFDSPKFVSIMEVVNDRSFDNNATILNRIHVVYSLSKDLGVPGFRVGMIYSNNEIVVAAATKMSSFGLVSSQTQYLLANLLSDKKFTLKYMEETQRRKQPSNVKVYFGRRLATHRSKSHDLCLERFVPSPTWVMKAWETTQDEILTIGGLDAVVFCRMLVFSIRVFSVAAIICIALVLPVNYYGQERIHKIIPFESLEVFTIENVKEGSRGLWAHCLALYIITLTACSLLYFEFRSITNLRLVHITGSPPNPSHFSILVRGIPWSSNESYLDVVKKFFSYYHASTYLSHQIVYKSGAVQKLKDDAEYACRMLSGGLEQTCKPSFAQCYFCGGSTNFKIISNEIDSIHARTGYRDIHIDAGKKECAAAFVFFKSRYAALMAAKNLQTSNPMLWVTDQAPEPHDVYWSNLCIPYRQLWIRKIATFVASITFVLVFLIPVTFAQGLTQLDKLQKMFPFLTGILQKKFMIQLVTGYLPSVILVLFLYAVPPLMMLFSAVEGSISRSGRKKSACYKVLYFSIWNVFFVNVFAGSVISQLSVFTSITELPAQLAKAVPAQATFFTTYVLSSGWASLSFEIMQLFPLFCNMFQRLVLCSKEDSLDGALTFPYHTEVPRVLLFGFLGFTCAILAPLILPFLLFYFFLAYLVYRNQIINVYITKYDGGGHLWPIAHNTTVFSLVFAQVIALGVFGLKRSTVASGFTIPLLIGTILFHQYCRQRFLPVFKNNAAQVLIDMDRRDELCGRMEEIYEQLRSAYGQFTGSSQSECSSTHRDDRDRVRTPEDMETGKEMRRQDLSWPV. 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01306 1028 Gene3D - 61 317 IPR015421 GO:0003824
Seca4g01306 1028 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 331 990 IPR045122 GO:0005227
Seca4g01306 1028 Pfam Late exocytosis, associated with Golgi transport 333 467 IPR032880 -
Seca4g01306 1028 Pfam Aminotransferase class I and II 39 332 IPR004839 GO:0009058|GO:0030170
Seca4g01306 1028 Pfam Calcium-dependent channel, 7TM region, putative phosphate 652 919 IPR003864 GO:0016020
Seca4g01306 1028 Pfam Cytosolic domain of 10TM putative phosphate transporter 488 641 IPR027815 -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 74 90 - -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 41 67 - -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 262 286 - -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 223 246 - -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 187 211 - -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 111 131 - -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 133 154 - -
Seca4g01306 1028 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 294 317 - -
Seca4g01306 1028 MobiDBLite consensus disorder prediction 997 1021 - -
Seca4g01306 1028 MobiDBLite consensus disorder prediction 989 1028 - -
Seca4g01306 1028 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 61 317 - -
Seca4g01306 1028 SUPERFAMILY PLP-dependent transferases 1 331 IPR015424 -
Seca4g01306 1028 CDD AAT_like 75 331 - -
Seca4g01306 1028 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 268 281 IPR004838 GO:0003824|GO:0009058|GO:0030170
Seca4g01306 1028 Gene3D Aspartate Aminotransferase, domain 1 27 331 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01306 Seca-Chr4 20653146 20674603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01306 K21989 - gmx:100789875 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01306 4 20653146 20674603 Seca4g01306 4 20653146 20674603 ECH
Seca4g01306 4 20653146 20674603 Seca8g03495 8 100488062 100501645 PCT