Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01296 ATGGAAAACATACAGAAGATCAATACTGGAAACCACTCAGAGAAAACAGCAAACACAGAACGTGTTTCCACTGACGATGAAAACATTATAATAAACCCCCAGTTTGAGGATGGCCTTAATAATTGGTTAGGAAGAGGCTGCAAGATTGTATTACATGATTCCATGGCAGATGGGAAAATCCTTCCAAAGTCAGGGAAGTTCTTTGTATCTGCATCAGAACGCACACAAAGTTGGAATGGAATTCAGCAGGAGATCACTGGAAGAGTGCAGCGCAAACTCGCCTATGAGGTCTCTGCTTTAGTTCGGATTTTTGGAAATAATGTCACAACTTCTGATGTACGGGCTACTTTGTGGGTTCAAACACCAGATCTTCGAGAACAGTATATAGGCATTGCCAATGTGCAGGCAACAAGTAGTGATTGGGTTCAGATGCAGGGGAAGTTCCTTCTAAATGGCTCCCAATCAAAAGTCATTGTTTATTTAGAAGGTCCCCCTCCAGGCGTTGACATTCTTGTCAATACTTTGGTTATAAAGCATGCGGCTAAGACACCACCTTCAACACCCCCTGATTTTGAGAATGTTGATTTTGGTGTTAATATAATTGAGAACAGTAATCTGGCTAATGGCACCAATGGATGGTTTCCCCTTGGTAATTGTACTTTGAGCGTTGGAAGTGGTTCACCACGTGTAATTCCACCAATGGCAAGAGATTCTCTTGGGCCTCATGAATCACTAAGTGGACGCTACATTCTTGTAACCAATCGGACACAAACATGGATGGGTCCAGCTCAGATGATCACTGAAAAACTAAAACTCTTTCTAACTTATCAAGTATCTGCTTGGGTCAGAATTGGTTCTGCATCAACTGGGCCTCAGAATGTGAATATTGCCCTTAGTGTTGACAACCAATGGGTCAATGGAGGACAAGTTGAGGTCACTGATAATAGATGGCATGAAATTGGTGGGTCATTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTTTATATTCAAGGCCCTGCTTCTGGTATTGACTTCATGGTGGCTGGAGTTCAAATTTTTCCTGTTGATAGACAGGCAAGGTTTAGATATTTAAGGAGGCAGACAGACAAGATCCGTAAGCGTGATGTTACCTTAAAATTCTCTGGGTTGGACTTAAGTGAGTATACCTTTGTGAAAGTAACACAAGTACTAAACGATTTTCCAATTGGATCATGCATCAATAGAACAAATATCGACAATGAAGACTTTGTTGACTTCTTTGTGCAACATTTTAACTGGGCTGTATTTGGGAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAAGTTGAACTACAAGGATGCTGATGACATGTTAGACTTATGCCAGAAGTACAAGATAGACATTCGTGGTCATTGTATCTTCTGGGAAGTGGAAAGCAATGTTCAACAATGGATCAAATCACTGAACAAAAATGATTTAATGACAGCTGTCCAAAATCGCTTAACTAACTTATTGACTCGTTACAAAGGTAAATTCAGGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGATAGACTAGGTAAGGATATAAGAGCAAACATGTTCAAGACTGCACACAACCTAGATCCATCTTGTGCTCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACTAGATCATCACCAGAAAAGTACATTCAGCATATTCTTGATTTGCAACAACAAGGTGCCCCAGTTGGGGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAATTGGGTAATCTTGGGATACCAATTTGGTTTACTGAGCTTGATGTGTCTTCAACCAATGAATATGTGAGAGGTGATGATTTGGAAGTTATGATGAGGGAAGCATTGGCACACCCTTCTGTAGATGGTATAATGTTGTGGGGATTTTGGGAATTGTTTATGAGCAGGGACAATTCACACTTGGTGAACGCAGAAGGTGAACTCAATGAAGCTGGGAAGAGATTCCTTGCTCTTAAACAAGAGTGGTTATCTCACAGCCATGGTCATGTTGATGAACAAGGTCAATTCAGCTTCAGAGGCTTCAGTGGTACATATAACGTGGAAGTTGTGACCTTAGAAAAGAAAGTTTCTAAGACATTTGTTGTTGACAAGGGTGACTCCTCATTGGTGGTGTCAATCGACTTATAA 2223 0.4058 MENIQKINTGNHSEKTANTERVSTDDENIIINPQFEDGLNNWLGRGCKIVLHDSMADGKILPKSGKFFVSASERTQSWNGIQQEITGRVQRKLAYEVSALVRIFGNNVTTSDVRATLWVQTPDLREQYIGIANVQATSSDWVQMQGKFLLNGSQSKVIVYLEGPPPGVDILVNTLVIKHAAKTPPSTPPDFENVDFGVNIIENSNLANGTNGWFPLGNCTLSVGSGSPRVIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSASTGPQNVNIALSVDNQWVNGGQVEVTDNRWHEIGGSFRIEKQPSKVMVYIQGPASGIDFMVAGVQIFPVDRQARFRYLRRQTDKIRKRDVTLKFSGLDLSEYTFVKVTQVLNDFPIGSCINRTNIDNEDFVDFFVQHFNWAVFGNELKWYWTEPQQGKLNYKDADDMLDLCQKYKIDIRGHCIFWEVESNVQQWIKSLNKNDLMTAVQNRLTNLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHNLDPSCALFVNDYHVEDGCDTRSSPEKYIQHILDLQQQGAPVGGIGIQGHIDSPVGPIVCSALDKLGNLGIPIWFTELDVSSTNEYVRGDDLEVMMREALAHPSVDGIMLWGFWELFMSRDNSHLVNAEGELNEAGKRFLALKQEWLSHSHGHVDEQGQFSFRGFSGTYNVEVVTLEKKVSKTFVVDKGDSSLVVSIDL. 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01296 740 SMART glyco_10 434 684 IPR001000 GO:0004553|GO:0005975
Seca4g01296 740 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 611 621 IPR031158 -
Seca4g01296 740 Pfam Glycosyl hydrolase family 10 398 654 IPR001000 GO:0004553|GO:0005975
Seca4g01296 740 PRINTS Glycosyl hydrolase family 10 signature 579 591 IPR001000 GO:0004553|GO:0005975
Seca4g01296 740 PRINTS Glycosyl hydrolase family 10 signature 547 558 IPR001000 GO:0004553|GO:0005975
Seca4g01296 740 PRINTS Glycosyl hydrolase family 10 signature 465 477 IPR001000 GO:0004553|GO:0005975
Seca4g01296 740 PANTHER GLYCOSYL HYDROLASE 184 732 IPR044846 GO:0004553|GO:0005975
Seca4g01296 740 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 388 683 IPR001000 GO:0004553|GO:0005975
Seca4g01296 740 FunFam Glycosyl hydrolase family 10 protein 23 179 - -
Seca4g01296 740 Gene3D - 197 354 - -
Seca4g01296 740 Gene3D - 22 180 - -
Seca4g01296 740 SUPERFAMILY Galactose-binding domain-like 26 180 IPR008979 -
Seca4g01296 740 FunFam Endo-1,4-beta-xylanase A 389 691 - -
Seca4g01296 740 Gene3D Glycosidases 388 695 - -
Seca4g01296 740 Coils Coil 666 686 - -
Seca4g01296 740 Pfam Carbohydrate binding domain 28 164 IPR003305 GO:0016798
Seca4g01296 740 Pfam Carbohydrate binding domain 199 342 IPR003305 GO:0016798
Seca4g01296 740 SUPERFAMILY Galactose-binding domain-like 197 357 IPR008979 -
Seca4g01296 740 SUPERFAMILY (Trans)glycosidases 394 691 IPR017853 -
Seca4g01296 740 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01296 Seca-Chr4 20428361 20434463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01296 12 740 Glycoside Hydrolase AT1G58370 72.578 0.0 1153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01296 - - gmx:100784250 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01296 4 20428361 20434463 Seca4g01296 4 20428361 20434463 ECH
Seca4g01296 4 20428361 20434463 Seca4g01296 4 20428361 20434463 PCT