Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01281 ATGGACCGCTTTCCCATACCCACCGCCATCCTCTTTCTCATCGCTACCTTCGTCGCCCTCGTCTCCGGTGGCCGTGACATCACCGGAGATCTTCTCCGATTACCCTCCCAAGCTTCCAGGTTCTTCCAATCACCTGCTGCTGCCGACGACAACAACGAGGGCACCAGGTGGGCCATTTTAATTGCCGGTTCCAATGGCTACTGGAATTACAGGCATCAGGCTGATGTTTGTCATGCGTATCAACTACTGAGGAAAGGTGGCCTGAAAGAAGAAAACATTGTTGTTTTTATGTATGATGACATTGCTTCCAATGAAGAGAACCCACGGCCTGGAGTCATCATTAACAGTCCACATGGAGATGATGTTTACAAGGGAGTCCCTAAGGATTACGTTGGTGAAGATGTTACTGTTAACAACTTTTTTGCTGCTTTACTTGGAAATAAGTCAGCTGTTACAGGTGGCAGTGGGAAGGTTGTGGATAGCGGTCCCAATGATCATATATTTATATACTACAGTGACCATGGGGGTCCAGGGGTGCTTGGGATGCCTACTAATCCTTACTTGTATGCGTCTGATCTGATTGAAGTATTGAAGAAGAAGCATGCTTCTGGAACATATAAAAGCCTAGTATTTTATCTCGAGGCATGTGAATCAGGGAGTATCTTTGAAGGTCTTCTTCCCGAAGGTCTGAATATTTATGCAACAACAGCTGCAAATGCAGAGGAAAGCAGTTGGGGAACGTATTGTCCTGGGGAGTATCCTAGTCCTCCCCCAGAATACGAAACATGTCTGGGTGACCTGTACAGTGTTGCTTGGATGGAAGACAGTGACATACACAATTTGCGAACAGAAACTTTGCACCAACAATACGAATTGGTAAAAGAAAGGACTATGAATGGAAATTCAATCTATGGTTCCCACGTGATGCAATATGGTGACATAGGGCTTAGCAAGGATCATCTCTTCCTATATTTGGGTACAAACCCTGCTAATGATAATTTTACTTTTGTGGATAAAAACTCATTGGTGCCACCTACAAAAGCAGTCAACCAAAGAGATGCAGATCTCATTCATTTCTGGGATAAGTTCCGCAAAGCTCCTGAGGGTTCTCCTAGGAAAGCTGCAGCTGAGAAACAAGTTCTGGAAGCAATGTCTCACAGAATGCATATAGACGACAGCATGAAACTTGTTGGAAAGCTCTTATTTGGCATAGAAAAGGGTCAAGAAGTGCTCAGCAGTGTTAGACCTGCTGGGCTACCACTTGTTGATGACTGGGACTGCCTAAAAACACTGGTTAGGACTTTTGAGACGCATTGTGGATCCCTGTCTCAGTATGGGATGAAACACATGAGGTCATTTGCAAACTTCTGCAACGCAGGAATACAGAAAGAGCAAATGGCTGAGGCCTCAGCACAAGCATGCGTCAGTATTCCAGCCAGTTCCTGGAGTTCTCTGCACAGGGGTTTCAGTGCATAA 1476 0.4533 MDRFPIPTAILFLIATFVALVSGGRDITGDLLRLPSQASRFFQSPAAADDNNEGTRWAILIAGSNGYWNYRHQADVCHAYQLLRKGGLKEENIVVFMYDDIASNEENPRPGVIINSPHGDDVYKGVPKDYVGEDVTVNNFFAALLGNKSAVTGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTNPYLYASDLIEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTAANAEESSWGTYCPGEYPSPPPEYETCLGDLYSVAWMEDSDIHNLRTETLHQQYELVKERTMNGNSIYGSHVMQYGDIGLSKDHLFLYLGTNPANDNFTFVDKNSLVPPTKAVNQRDADLIHFWDKFRKAPEGSPRKAAAEKQVLEAMSHRMHIDDSMKLVGKLLFGIEKGQEVLSSVRPAGLPLVDDWDCLKTLVRTFETHCGSLSQYGMKHMRSFANFCNAGIQKEQMAEASAQACVSIPASSWSSLHRGFSA. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01281 491 Pfam Peptidase C13 family 56 326 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 CDD legumain_C 353 474 - -
Seca4g01281 491 PIRSF Legumain 6 491 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 PRINTS Hemoglobinase (C13) cysteine protease signature 206 222 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 PRINTS Hemoglobinase (C13) cysteine protease signature 82 111 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 PRINTS Hemoglobinase (C13) cysteine protease signature 157 176 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 PRINTS Hemoglobinase (C13) cysteine protease signature 129 144 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 PRINTS Hemoglobinase (C13) cysteine protease signature 57 81 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 PIRSF AE 4 491 IPR043577 GO:0004197|GO:0051603
Seca4g01281 491 PANTHER HEMOGLOBINASE FAMILY MEMBER 24 476 IPR001096 GO:0006508|GO:0008233
Seca4g01281 491 FunFam Vacuolar-processing enzyme beta-isozyme 351 479 - -
Seca4g01281 491 Gene3D - 54 350 - -
Seca4g01281 491 Gene3D - 351 479 IPR046427 -
Seca4g01281 491 FunFam Vacuolar-processing enzyme beta-isozyme 54 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01281 Seca-Chr4 20178814 20184482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01281 K01369 - gmx:100791675 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01281 4 20178814 20184482 Seca4g01281 4 20178814 20184482 ECH