Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02118 ATGGCCAATAATTCTCAACCACCACCCTCTGGCATGCAGTATCGGCCAGTCATTCAAGCTCAGCAAGGGCAACCATTCGTTCCAATGACTTCACAACAATTTGGACCTGCAGGACATGCTATTCCTTCTTCAAATGTTGGGATGCCTGTTGTGCAGGGTCAACAGTTGCAGTATTCTCAACCAATGCAACAGTTGATTCCAAGACCGATGCAGCCTGGTCATCCTGCTTCTGCATCGCAGGCTATGCCTATGCCTATGCCGTATATTCAGTCAAACAGGCCACTGACATCTGGTCCACCACATTCACAGCAAACTGTTCCTCACTTAAGCAATCCTATGCCTGGCTTGGCTGTTTCAGGAGCAACTCCTCATTCTTCATATACTTTCACACCATCTTATGGTCAACAGCAAGATAATGCTAATGCAATGGCCCAATACCAGCATCCGCCTCAAATGCTTGCACCTCCTGCTGGACAACCTTGGCTACCTGCAGCTTCTCAGAGTGCTGCAGCTGTTACATCAGTCCAGCCGGCTGGAGCACAATCATCTGGTACTACATTGACTGATGCAGCAACTAATGCCACCAACCAGCACTCCTTATCTGATTGGCAAGAGCATACTTCTGCTGATGGGAGAAGATATTACTACAACAAGAGGACAAGGCAATCTAGTTGGGAAAAACCTTTGGAATTGATGTCACCTATTGAGAGGGCTGATGCATCAACTGTCTGGAAAGAATTCACTTCGTCTGAGGGAAGAAAGTATTATTTCAACAAGGTTACTCAACAATCAACGTGGTCAATACCGGAGGAACTTAAGTTGGCTCGTGAGCAGGCACAGAAAGCTACTAACCAGGGAATGCAGTCAGAAACAAATGATACATCCAATGCTGTTGTCTCCTTGGCTGCAAAATCAACGACGGCTAATGCAGCTAGCTCTAACACTTCTTTCACATCTAATGGGCTTGCTTCAAGCCCATCATCTGTCACACCAATTGCAGCCACTGATCATCAGCAGTTGGTTTCTGGATTATCAGGGACCTCGGTTTCTCACTCCATAATTACTTCAAGCACCACAGGAGCTGAACCAAGCAATTTGGTAACTGTGAGCCCTGCACCTACAACGGTTGCAGTAAGCTCAGGAGTAGCTGCAAACTCACTTGATTCCAAAATTGTTGAAAATCAAGCATCTCAGGATTTTGTTTCTTCTGTCAATGGAGCTTCTCTTCAAGATACTGAAGAAGCCAAAAGAGGATTGCCTGTGGTTGGAAAAATTAATGTGACTTCATCCGAGGAGAAAACCAATGATGATGAAACCTTGGTATATGCAAGTAAGCTGGAGGCAAAAAATGCATTTAAAGCGCTTCTGGAATCTGTGAATGTTAAGTCTGATTGGACATGGGAACAGGCAATGAGAGAAATCATCAATGAAAAAAGATATAATGCCCTAAAAACACCTGGTGAGCGAAAACAAGCTTTTAATGAGTATCTGGGCCAAAGGAAGAAGCTAGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAGAGCCCGTGAAGAATTCACAAAGATGTTGGAAGAGTGCAAGGAACTTACATCATCCACAAGATGGAGCAAAGCTATAAGTATGTTTGAAAATGATGAACGATTCAACGCCGTTGAAAGACCAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAAAAGGAACTTGCTGCCGAGGAACACCGGCGGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGATTATGTGAAGGTGAATAGTCATTGGCGGAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTACGACTTGAAAAAATTGATCGCTTGCTTGTTTTCCAGGACTATATTCGTGACTTGGAGAAGGAAGAAGAGGAACAAAAAAGAATACAGAAGGATCGATTCCGTCGAGGTGAAAGGAAAAATCGTGATGCATTTCGCAAGTTGCTGGAAGAACATGTTGCTGCTGGAGTTCTTACTGCTAAAATTCCATGGCGAGAATATTGCTTGAAGGTCAGGGAGTTGCCTCAATATCAAGCCGTTGCATCAAATACTTCTGGTTCCACTCCAAAAGATTTATTTGAGGATGTTGCTGAAGATCTTGAAAAACAGTATCATGAAGACAAGACACTCGTAAAAGATACAATTAAGTCAGGCAAGGTCACTGTAGTGACTTCATCAGTATTTGAGGATTTTAAGTTGGCTGTATTGGAAGAAGCTTCTTGCCAAACAATATCTGAGATCAATTTGAAGCTTATATTCGAAGAGCTGTTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACCTGTTGTATACATTTAAGGATATTACTACTACTTCAAAATGGGAGGATTGCAAATCACTTTTTGAAGAGACACAAGAGTACAGATCGATTGGGGATGAAAGCTACAGCAAAGAAATTTTTGAGGAATACATTACATACTTAAAGGAAAAAGCTAGAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCCAAAAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAGGAGAGAAAAGAGAAGGATAGAGAACGTGAGAAAGAAAAATTGAAGGAAAGACATAAGAAGGATGACACAGATAGTGATAATCAAGACATAACTGACAGCCATGGTTACAAAGAGGAGAAGAAAAGGGAAAAGGATAAGGAAAGGAAACATCGGAAAAGGCGTCAAAGCAGTATAGACGATGTGGATTCTGAAAGGGATGAGAAAGAAGAGTCTAAAAAATCACGGAGACATGGCAGTGACCGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGAATCAGACAATGAAAGCAGGCATAGAAGACACAAGAGGGAGCACTGGGATGGTTCCAGGAAAACTGGGGGGTATGAGGAACTCGAAGATGGGGAGCTCGGTGATGATGCTGAGGTTTCGTAG 3018 0.4304 MANNSQPPPSGMQYRPVIQAQQGQPFVPMTSQQFGPAGHAIPSSNVGMPVVQGQQLQYSQPMQQLIPRPMQPGHPASASQAMPMPMPYIQSNRPLTSGPPHSQQTVPHLSNPMPGLAVSGATPHSSYTFTPSYGQQQDNANAMAQYQHPPQMLAPPAGQPWLPAASQSAAAVTSVQPAGAQSSGTTLTDAATNATNQHSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSEGRKYYFNKVTQQSTWSIPEELKLAREQAQKATNQGMQSETNDTSNAVVSLAAKSTTANAASSNTSFTSNGLASSPSSVTPIAATDHQQLVSGLSGTSVSHSIITSSTTGAEPSNLVTVSPAPTTVAVSSGVAANSLDSKIVENQASQDFVSSVNGASLQDTEEAKRGLPVVGKINVTSSEEKTNDDETLVYASKLEAKNAFKALLESVNVKSDWTWEQAMREIINEKRYNALKTPGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSTRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKELAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRFRRGERKNRDAFRKLLEEHVAAGVLTAKIPWREYCLKVRELPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLVKDTIKSGKVTVVTSSVFEDFKLAVLEEASCQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTTSKWEDCKSLFEETQEYRSIGDESYSKEIFEEYITYLKEKAREKERKREEEKAKKEKEREEKEKRKEKERKEKDREREKEKLKERHKKDDTDSDNQDITDSHGYKEEKKREKDKERKHRKRRQSSIDDVDSERDEKEESKKSRRHGSDRKKSRKHANSPESDNESRHRRHKREHWDGSRKTGGYEELEDGELGDDAEVS* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02118 1005 Coils Coil 628 648 - -
Rops9g02118 1005 ProSiteProfiles WW/rsp5/WWP domain profile. 238 271 IPR001202 GO:0005515
Rops9g02118 1005 MobiDBLite consensus disorder prediction 959 993 - -
Rops9g02118 1005 ProSiteProfiles FF domain profile. 445 499 IPR002713 -
Rops9g02118 1005 SMART FF_2 512 567 IPR002713 -
Rops9g02118 1005 SMART FF_2 787 842 IPR002713 -
Rops9g02118 1005 SMART FF_2 654 715 IPR002713 -
Rops9g02118 1005 SMART FF_2 580 634 IPR002713 -
Rops9g02118 1005 SMART FF_2 445 499 IPR002713 -
Rops9g02118 1005 Gene3D FF domain 781 854 IPR036517 -
Rops9g02118 1005 FunFam Pre-mRNA-processing protein 40A 781 854 - -
Rops9g02118 1005 MobiDBLite consensus disorder prediction 121 135 - -
Rops9g02118 1005 SUPERFAMILY WW domain 231 272 IPR036020 GO:0005515
Rops9g02118 1005 SUPERFAMILY WW domain 202 236 IPR036020 GO:0005515
Rops9g02118 1005 CDD WW 201 230 IPR001202 GO:0005515
Rops9g02118 1005 Coils Coil 769 793 - -
Rops9g02118 1005 ProSiteProfiles FF domain profile. 652 715 IPR002713 -
Rops9g02118 1005 ProSiteProfiles FF domain profile. 512 567 IPR002713 -
Rops9g02118 1005 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 199 789 IPR039726 GO:0045292
Rops9g02118 1005 FunFam Pre-mRNA-processing protein 40A 575 643 - -
Rops9g02118 1005 Gene3D - 197 239 - -
Rops9g02118 1005 Gene3D - 240 284 - -
Rops9g02118 1005 Gene3D FF domain 445 500 IPR036517 -
Rops9g02118 1005 MobiDBLite consensus disorder prediction 851 1005 - -
Rops9g02118 1005 SUPERFAMILY FF domain 649 722 IPR036517 -
Rops9g02118 1005 CDD WW 244 271 IPR001202 GO:0005515
Rops9g02118 1005 FunFam Pre-mRNA-processing protein 40A 501 574 - -
Rops9g02118 1005 Pfam FF domain 656 711 IPR002713 -
Rops9g02118 1005 Pfam FF domain 447 496 IPR002713 -
Rops9g02118 1005 Pfam FF domain 792 839 IPR002713 -
Rops9g02118 1005 Pfam FF domain 583 631 IPR002713 -
Rops9g02118 1005 Pfam FF domain 514 564 IPR002713 -
Rops9g02118 1005 ProSitePatterns WW/rsp5/WWP domain signature. 203 228 IPR001202 GO:0005515
Rops9g02118 1005 Pfam WW domain 244 269 IPR001202 GO:0005515
Rops9g02118 1005 Pfam WW domain 201 228 IPR001202 GO:0005515
Rops9g02118 1005 SUPERFAMILY FF domain 788 849 IPR036517 -
Rops9g02118 1005 Coils Coil 840 894 - -
Rops9g02118 1005 ProSiteProfiles WW/rsp5/WWP domain profile. 201 230 IPR001202 GO:0005515
Rops9g02118 1005 SUPERFAMILY FF domain 437 499 IPR036517 -
Rops9g02118 1005 MobiDBLite consensus disorder prediction 926 950 - -
Rops9g02118 1005 FunFam pre-mRNA-processing protein 40A isoform X1 444 499 - -
Rops9g02118 1005 FunFam Pre-mRNA-processing protein 40A 645 726 - -
Rops9g02118 1005 ProSiteProfiles FF domain profile. 580 634 IPR002713 -
Rops9g02118 1005 Coils Coil 561 588 - -
Rops9g02118 1005 MobiDBLite consensus disorder prediction 116 135 - -
Rops9g02118 1005 SUPERFAMILY FF domain 572 641 IPR036517 -
Rops9g02118 1005 SMART ww_5 198 230 IPR001202 GO:0005515
Rops9g02118 1005 SMART ww_5 239 271 IPR001202 GO:0005515
Rops9g02118 1005 Gene3D FF domain 575 644 IPR036517 -
Rops9g02118 1005 Gene3D FF domain 645 725 IPR036517 -
Rops9g02118 1005 Gene3D FF domain 501 574 IPR036517 -
Rops9g02118 1005 SUPERFAMILY FF domain 506 574 IPR036517 -
Rops9g02118 1005 Coils Coil 493 516 - -
Rops9g02118 1005 MobiDBLite consensus disorder prediction 851 919 - -
Rops9g02118 1005 ProSitePatterns WW/rsp5/WWP domain signature. 244 269 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02118 Rops-Chr9 39044990 39068851 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02118 K12821 - gmx:100806019 1490.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02118 9 39044990 39068851 Rops9g02118 9 39044990 39068851 ECH