Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02109 ATGAAGTCCATGAATGATAGCATCACTGATGATGAAAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGGTTACCTCTTCTGGCCCTCCACATCATAGTCATCAAGATCATCATCACTACTATCATCAGCCACAACCTTCTTCTGTTTCTAGTACTGTCCCCTCAAACTTCTACCTGTCACCTTCACACCTAAACACTTCTGGAATCTGTTATAGTGTTGGTGAAAACAGTGCCTTTCATTCTCCTCCTTTGGCTATGATGCCACTCAAGTCTGATGGGTCACTTTGCATCATGGAAGCTCTCAGCAGGTCACAAACCCAAGTGATGGTGCCAACTGCATCTCCCAAACTTGAGGACTTCCTAGGTGGTGCAACTATGGGAGCTCAAGAATATGGAAGTCATGAAAGAGAGGCAATGGCTCTTAGCTTAGACAGCATCTACTATAGTCACAATGTTGAACCTCAAACCAATAGAGACCATTCTTCACTGGACCTTCTCTCTGATCCTTTCAGGCAACAAGGCCATGTCAATGTCCAGCCCTATCATCCATTTTTTTCAGGACTTGCTTGCCATGGGATTTATCAAACACCATTGGTTGAAGAAACCAAGGAACCCCATGTCACAGTTTGCAGCTCCCAAATGCCTCAAGTGGCTGAAGAAGGCGGCATTGCTTGCTTCAAAAACTGGGTGGCCACAAGAGAGTACTCTTCAGCTCAGCACACTCTACAGCAGCAACAAGTGAATAGTGGTGCTTCTGGTTCTGTTGGTGTTGGCACAGGTGGTTGTGGGGAGTTACAATCGTTGAGCCTTTCCATGAGTCCTGGCTCACAATCTAGCTGTGTTACGGTTCCAAGTCAGATCTCACCTTCTGGGACGGACTCTATGGCCATGGAAGCTAAAAAGAGAGGGTCTTCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGACAGAGAACTTCACAGTATAGAGGAGTTACAAGGCATAGATGGACTGGTAGATATGAAGCGCATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGATCGTATGATCTTGCTGCCCTCAAGTATTGGGGACCTTCAACACATATAAACTTCCCGTTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGAGCAGACAGGAATACGTTGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGGGTGACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAAGCATATGATATAGCTGCAATCAAATTCCGTGGGGTAAATGCAGTCACAAACTTTGACATATCTAGATACGATGTTGAGAGAATCATGGCCAGCAATACCCTTCTTGCTGGAGAGCTTGCAAGAAGAAACAATAAGGATAATGAACCAAGAACTGCAGCCATCGAGTGTAATGTGTCAAGCCCGGTTATAAACAAAGAAGTTGAAGCGGTGAACAACAATGAAAATGGCTCAGATTGGAAAATGGCTTTGTATCAGTCCCCACAACAACAGTCAATTAGCTGTGACCAAAAAACTATCAAGTGTGGAAATTATAGAAACTCTACTTTCTCTATGGCCCTACAAGACCTTATTGGGATTGATTCAACGATGCTAGATGAGTCTACTAAGATAGGGACTCATTTTTCAAACCCGTCCTCGCTGGTTACCAGTTTAAGCAGTTCAAGAGAAGGCAGCCCTGATAAAACTGGCCCCACAATGCTCTTTCCAAAGCCCCCAACGGGATCCAAGATGGTTAGCCCCATTGCTATTGGTGTTAGCTCTTTGTTTCCTTCAGCAGCAGCTCAATTGAGGCCAGCTGCTTCAGCTATCTCAATGTCTCACTTGCCAGTTTTTGCGGCTTGGAATGATACCTAG 2055 0.4487 MKSMNDSITDDENNHNWLGFSLSPHMKMEVTSSGPPHHSHQDHHHYYHQPQPSSVSSTVPSNFYLSPSHLNTSGICYSVGENSAFHSPPLAMMPLKSDGSLCIMEALSRSQTQVMVPTASPKLEDFLGGATMGAQEYGSHEREAMALSLDSIYYSHNVEPQTNRDHSSLDLLSDPFRQQGHVNVQPYHPFFSGLACHGIYQTPLVEETKEPHVTVCSSQMPQVAEEGGIACFKNWVATREYSSAQHTLQQQQVNSGASGSVGVGTGGCGELQSLSLSMSPGSQSSCVTVPSQISPSGTDSMAMEAKKRGSSKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARSYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNNKDNEPRTAAIECNVSSPVINKEVEAVNNNENGSDWKMALYQSPQQQSISCDQKTIKCGNYRNSTFSMALQDLIGIDSTMLDESTKIGTHFSNPSSLVTSLSSSREGSPDKTGPTMLFPKPPTGSKMVSPIAIGVSSLFPSAAAQLRPAASAISMSHLPVFAAWNDT* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02109 684 PRINTS Ethylene responsive element binding protein signature 334 345 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 PRINTS Ethylene responsive element binding protein signature 475 495 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 FunFam AP2-like ethylene-responsive transcription factor 434 495 - -
Rops9g02109 684 SUPERFAMILY DNA-binding domain 434 495 IPR016177 GO:0003677
Rops9g02109 684 Pfam AP2 domain 333 391 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 Pfam AP2 domain 436 485 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 MobiDBLite consensus disorder prediction 28 60 - -
Rops9g02109 684 MobiDBLite consensus disorder prediction 609 639 - -
Rops9g02109 684 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 560 - -
Rops9g02109 684 MobiDBLite consensus disorder prediction 609 627 - -
Rops9g02109 684 CDD AP2 332 399 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 SUPERFAMILY DNA-binding domain 332 401 IPR016177 GO:0003677
Rops9g02109 684 ProSiteProfiles AP2/ERF domain profile. 435 493 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 ProSiteProfiles AP2/ERF domain profile. 333 399 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 FunFam AP2-like ethylene-responsive transcription factor ANT 332 401 - -
Rops9g02109 684 Gene3D AP2/ERF domain 435 495 IPR036955 GO:0003700|GO:0006355
Rops9g02109 684 Gene3D AP2/ERF domain 332 401 IPR036955 GO:0003700|GO:0006355
Rops9g02109 684 CDD AP2 434 495 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 SMART rav1_2 333 405 IPR001471 GO:0003700|GO:0006355
Rops9g02109 684 SMART rav1_2 435 499 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02109 Rops-Chr9 38832700 38836906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02109 416 684 AP2-EREBP Transcription Factor Family AT4G37750 26.014 2.35e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Rops9g02109 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02109 K09285 - gmx:100798179 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02109 9 38832700 38836906 Rops9g02109 9 38832700 38836906 ECH
Rops9g02109 9 38832700 38836906 Rops10g01188 10 24226786 24231050 PCT