Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02106 ATGGGGGGTCAGGAGAATACCATGGGGTTTCATCATGGAAATGAGAGCATTCTGACTTGTCCATCATCTGGTTTGAGTGCAAATGTTTCAGAAATGGCTATTAGTTCTGTGTCTATGGCTAAGCCTTCAGATGTGGCCAATCCTTTTCTTGCTCCTTCTGCGTGGGATCCACTTGTTTCATTGAGTCAGGCTCATACTTTTGGAGGCTCTTCCATGGTTTCTCATAGTGATTTTACCAATGCCAATTCATCTTACCCTCTTGTTTTGGAGAATCAGGGAATGAGTAGCACCTCTCATCTTGTTCAATACATGTCTGACTCAAATATTGGGGGCATGGTCCCCAAGGTTCCCTCTTATGGAAGTGGGAGTTTCTCAGAAATGGTTGGCTCTTTTGGCCAACCTGGGTCTAGTGATATAGCTAACACAGGGTATCCACCACATTATAATCCAATGAAGGAACCTGGAATTGAAAGGGCTCCAATTAATGGTGAACAATCTCAGGTTGAAGACTCAACTCCTGAAGAGGGAGCCCCAGGATCTGCAAATAGAAGAAAGCGAGGGCTTGATCGAAATTCTACTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGGGTGGAAGATTCTCCTGGGAAGATCTCTGATGGTCCAAAAGAGAATGAAAAGAAACCAAAAGTTGAGCAGAATGCTAGTGCAGATTTGCGTGGTAAGCAATCAGTGAAGCAAGCTAAAGAAAACTCAAACAGTGGAGAAGCTCCCAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAATAGCCACAGCCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAGAGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATTATTAACTACGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAATTTTGATGTAGAGCGGATCTTATCCAAGGATATTCTCCAGTCACGCTTAGGACATGGAATTGGTGGATATGGTCCTGGTATCAGTTCCCCTCATCCATTCCCCAATGGAAATTTTCAAGGATCTCTGGCTGCCATGCCTAGTTCATCACAATTCCCTCCTTTGCCCCAGACTGTTTTGGACCACGAGTTCCAAAGCTTCTATGGAATGGGATATGATTCCAATACAGCACTTGACAATTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAA 1275 0.4384 MGGQENTMGFHHGNESILTCPSSGLSANVSEMAISSVSMAKPSDVANPFLAPSAWDPLVSLSQAHTFGGSSMVSHSDFTNANSSYPLVLENQGMSSTSHLVQYMSDSNIGGMVPKVPSYGSGSFSEMVGSFGQPGSSDIANTGYPPHYNPMKEPGIERAPINGEQSQVEDSTPEEGAPGSANRRKRGLDRNSTFSPNKNAEGDGVEDSPGKISDGPKENEKKPKVEQNASADLRGKQSVKQAKENSNSGEAPKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRLGHGIGGYGPGISSPHPFPNGNFQGSLAAMPSSSQFPPLPQTVLDHEFQSFYGMGYDSNTALDNLGPNGRLKTEL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02106 424 Gene3D - 262 336 IPR036638 GO:0046983
Rops9g02106 424 MobiDBLite consensus disorder prediction 204 229 - -
Rops9g02106 424 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 170 375 IPR024097 GO:0006355
Rops9g02106 424 FunFam Basic helix-loop-helix transcription factor 262 334 - -
Rops9g02106 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 333 IPR036638 GO:0046983
Rops9g02106 424 MobiDBLite consensus disorder prediction 134 256 - -
Rops9g02106 424 SMART finulus 271 321 IPR011598 GO:0046983
Rops9g02106 424 CDD bHLH_AtBPE_like 255 340 - -
Rops9g02106 424 MobiDBLite consensus disorder prediction 231 252 - -
Rops9g02106 424 Pfam Helix-loop-helix DNA-binding domain 268 316 IPR011598 GO:0046983
Rops9g02106 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02106 Rops-Chr9 38699617 38703809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02106 1 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.824 2.56e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g02106 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02106 - - gmx:100801930 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02106 9 38699617 38703809 Rops9g02106 9 38699617 38703809 ECH