Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02103 ATGGTGGATCCGTGCGCGCTCGGTTGGATTCTGTGTTCCGTTCTGAGTCTCTTTGCGCTTTACAGTTTGCTTTTCGCGGGAAAAAGCCGTCGCGCTTCGCCGGAGGAGAAGGCTACTCAGTCCGTGGAGAGCGTGACGACCGCCGTCGGAGAATGTAGATCGGAGAAACTTAACGGCGACGATGCTGACATCATCATTGTCGGAGCTGGTGTCGCTGGTTCCGCTCTGGCTCACACTCTCGGCAAGGATGAACGTCGAGTGCATGTCATTGAAAGAGATCTGAGTGAGCCTGACCGAATTGTTGGAGAGTTGCTACAGCCTGGGGGCTATCTCAGATTAATTGAATTGGGACTTGAAGATTGTGTGGAGGAAATTGATGCTCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACATACTCGTATCTCTTATCCATTGGAAAAGTTCCACTCAGATGTCTCTGGTAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGCGAGAGAAGGCTGCCTCCCTTCCTAATGTACGATTGGAGCAAGGAACAGTGACTTCCCTACTTGAAGAGAAAGGGACAATTAAAGGTGTGCAATACAAGACCAAAGATGGTCAGGAATTGACAGCATATGCTCCTCTTACCATAGTTTGTGATGGCTGTTTCTCAAACTTACGTCGTTCTCTTTGTAATCCTAAGGTAGATATTCCCTCTTGTTTTGTTGGCTTAGTTTTAGAGAACTGTGAACTTCCATGTGCAAATCATGGCCACGTCATACTGGGAGATCCTTCGCCAATTCTGTTCTATCCTATAAGCAGTACAGAGATTCGCTGTCTGGTGGATGTACCAGGTCAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGCAAAGTATTTGAAGACAGTGGTGGCTCCACAGATTCCCCCTGAGCTTTATGATGCCTTCATAGCGGCTGTGGACAAAGGCACCATAAGGACAATGCCAAACAGAAGCATGCCAGCAGACCCTCTTCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAATATGCGGCATCCACTAACAGGGGGTGGAATGACTGTGGCATTGTCCGATATTGTGGTGCTGAGAAATCTTCTCAAACCTTTGCGTGACCTGAACGATGCATCCACACTTAGCAAATACCTTGAATCCTTTTATACCTTGCGTAAGCCTGTGGCATCCACCATAAATACGTTGGCAGGAGCTCTTTACAAGGTTTTTTGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCCTTGGAGGCGTATTCTCGCAAGGACCAGTCTCTTTACTTTCAGGATTAAATCCTCGTCCCTTGAGCTTGGTCCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTATTAGTACCATTTCCTTCACTTAAGCGGATATGGATGGGAGCCCGATTACTCTCTGGTGCTTCTGGAATCATCTTGCCCATAATTAAGGCTGAAGGGATACGCCAGATGTTTTTCCCCGCCACTGTTCCAGCTTATTACAGAACTCCCCCGGTTGCACCACAGTGA 1587 0.4732 MVDPCALGWILCSVLSLFALYSLLFAGKSRRASPEEKATQSVESVTTAVGECRSEKLNGDDADIIIVGAGVAGSALAHTLGKDERRVHVIERDLSEPDRIVGELLQPGGYLRLIELGLEDCVEEIDAQQVFGYALFKDGKHTRISYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDIPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQIPPELYDAFIAAVDKGTIRTMPNRSMPADPLPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDASTLSKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGVFSQGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLVPFPSLKRIWMGARLLSGASGIILPIIKAEGIRQMFFPATVPAYYRTPPVAPQ* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02103 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 212 227 - -
Rops9g02103 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 355 - -
Rops9g02103 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 - -
Rops9g02103 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 63 85 - -
Rops9g02103 528 Pfam Squalene epoxidase 213 482 IPR013698 GO:0004506|GO:0016020|GO:0050660
Rops9g02103 528 PANTHER SQUALENE MONOOXYGENASE 14 524 IPR040125 GO:0004506|GO:0016126
Rops9g02103 528 SUPERFAMILY FAD/NAD(P)-binding domain 62 437 IPR036188 -
Rops9g02103 528 FunFam Squalene monooxygenase 2 56 436 - -
Rops9g02103 528 Gene3D - 55 444 IPR036188 -
Rops9g02103 528 Pfam NAD(P)-binding Rossmann-like domain 66 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02103 Rops-Chr9 38631322 38635210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02103 40 524 Miscellaneous Gene Families AT1G58440 80.247 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02103 K00511 - gmx:100804406 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02103 9 38631322 38635210 Rops9g02103 9 38631322 38635210 ECH
Rops9g02103 9 38631322 38635210 Rops10g01192 10 24297388 24301591 PCT