Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02095 ATGGAAGAATACGCTAATAATCACATGAGTGAAAACACAGGTCAAAGTCCAAGGCCAAATTTCTTGTACTCTTCTTCTAGTGCTGGTGTTGGAAACCATCATCATCATCATCAGCTTCCAATCAACACCTTTCATCTTCAATCAGGTGGTGGTTCAGATCACTGCTTTCAAACCGATCATGCACCACCATCACACCCTGCTGTGAAAACTGAAGCCACAACTTCACAGCTTCATACTTCGATTTTCCACTACCCCTTAATGAGAGGAAATCTTCACAACACTATGCATCATCCCCATCACAGTCAACAACAAGGAGGGAGTCCAAGCTCTAGTGAAGTTGAAGCCATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTAGAAGCTTACATGGATTGCCAAAAGATAGGAGCTCCGCCGGAAGTGGTGGCGCGTTTGGTTGCGGCAAGGCAAGAGTTTGAGGCACGGCAAAGATCTTCAGCTGGCACAAGGGAATCTTCCAAAGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTTTACAAGAGGCTATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTTCGGATCTTCTCTGATGATAAATGTGAAGGCGTTGGTTCATCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAACTGCCCGAGATTGATCCCCGTGCAGAAGACCGTGAACTTAAGAACCATTTGCTGAGGAAATACAGTGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAACTGCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGCCTGCATCCACAGAATGCAACTCTTTATATGGATGGTCACTACATGGCTGCTGATGGTCACTACCGTCTAGGGCCATGA 1131 0.435 MEEYANNHMSENTGQSPRPNFLYSSSSAGVGNHHHHHQLPINTFHLQSGGGSDHCFQTDHAPPSHPAVKTEATTSQLHTSIFHYPLMRGNLHNTMHHPHHSQQQGGSPSSSEVEAIKAKIIAHPQYSSLLEAYMDCQKIGAPPEVVARLVAARQEFEARQRSSAGTRESSKDPELDQFMEAYYDMLVKYREELTRPLQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMAADGHYRLGP* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02095 376 MobiDBLite consensus disorder prediction 90 114 - -
Rops9g02095 376 Pfam KNOX2 domain 170 215 IPR005541 GO:0003677|GO:0005634
Rops9g02095 376 MobiDBLite consensus disorder prediction 7 32 - -
Rops9g02095 376 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Rops9g02095 376 SMART KNOX2_2 165 216 IPR005541 GO:0003677|GO:0005634
Rops9g02095 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 94 347 - -
Rops9g02095 376 Pfam KNOX1 domain 115 157 IPR005540 GO:0003677|GO:0005634
Rops9g02095 376 MobiDBLite consensus disorder prediction 96 111 - -
Rops9g02095 376 SUPERFAMILY Homeodomain-like 278 352 IPR009057 -
Rops9g02095 376 SMART KNOX1_2 114 158 IPR005540 GO:0003677|GO:0005634
Rops9g02095 376 CDD homeodomain 289 341 IPR001356 GO:0003677
Rops9g02095 376 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Rops9g02095 376 MobiDBLite consensus disorder prediction 1 36 - -
Rops9g02095 376 SMART HOX_1 279 344 IPR001356 GO:0003677
Rops9g02095 376 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Rops9g02095 376 Gene3D - 282 344 - -
Rops9g02095 376 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Rops9g02095 376 FunFam Homeobox protein knotted-1-like 2 282 344 - -
Rops9g02095 376 SMART ELK_2 257 278 IPR005539 GO:0003677
Rops9g02095 376 MobiDBLite consensus disorder prediction 226 254 - -
Rops9g02095 376 Pfam ELK domain 257 278 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02095 Rops-Chr9 38469717 38474455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02095 52 376 Homeobox Transcription Factor Family AT4G08150 70.571 9.87e-158 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops9g02095 KNOX2 8.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02095 - - gmx:100807602 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02095 9 38469717 38474455 Rops9g02095 9 38469717 38474455 ECH