Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02094 ATGAAGAGGTTCTTTGCATGCTGCTTCACAAGCAGAGCCTCTGAGTTTCACTCTCACAGGAAGCACAAGCATTCTCAGTCTCAGATCATGGCGGGGAACAACTCTGGTCCAAGTGGAAGCAAGGCTGCCAATATTTTGCTCAATCATGACTTCTCTGGTGGGCTGAACTCTTGGCATCTCAATAGCTGCAATGGATATGTAATCTCAGCTGAAGCAGGTACTCAAGGAGGAATTTTAATGGAGTCAGATGGTAATTATGCTGTTATCACTGATCGAAAGGAATGCTGGCAAGGTCTTGAGCAAGATGTCACAGACAGAATTTCCATTGGTTCCACTTACATGGTTTCAGCTTGTGTTGGAGTCTCTGGGCTTTCTCAGGGATCTACTGATGTTCTAGCTACTCTGAAACTAGAATATCGTGATTCAGCTACGCGTTACTTGTTCATTGGAAGAACTTCTGTTGTGAAGGGTAGCTGGGAAAGGTTGGAAGGGACATTTTCATTGTCTACTATGCCTGACCGAGTTATATTTTATTTGGAAGGACCTGCTTCTGGAATCGACCTGCTTATACGATCAGTAGAGATCAATTGTTCCAGTCCAAATAATAATGTCACTAGCACAGGATGTGTTTCCGCTGGAGATGATGGTAACATCATAATAAACCCCCAATTTGAGGATGGCTTGAAAAATTGGTCCGGAAGAGGCTGCAAGATTATGTTGCATGATTCCATGGGTGATGGGAAAATAGTTCCAAAGGTTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAAAGCTGGAATGGAATTCAGCAGGAGATAACTGGACGTGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCCTTAGTTCGGATATTTGGCAACAATGTCACTAATGCTGATGTCCGGGCAACTTTGTGGGTCCAAACACCAGATCTTCGAGAGCAATATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGGTTACAATGCAGGGAAAATTCCTTCTAAATGGTTCACCATCGAAAGTGGTCCTTTATTTAGAGGGGCCCCCTCCAGGAACTGACATTCTTGTCAATACTTTGGCCTTAAACCATGCAGCTAAAACACCTCCTTCAACACCACCAGATGTAAAGAATGTTGCTTATGGGGTTAATATAATTGAGAACAGCAATCTGGCTGATGGCACCAAAGGATGGTATCCCCTTGGTAATTGCACTTTAAGTGTTAAAACTGGTTCACCTCATATAATTCCACCAATGGCAAGAGATTCTCTCGGGCCTCATGAACTCCTAAGCGGGCGCTACATCCTTGTAACTAATAGAACACAAACATGGATGGGTCCTGCTCAGACAATCACTGAGAAACTGAAACTCTTTTTGACTTATCAAGTATCTGCTTGGGTTCGGATTGGTTCAGGATCAGCTGGGCCACAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAGTGGGTGAATGGAGGACAAACTGAGGTTTCTGATGACAGATGGCATGAAATTGGTGGGTCATTTAGAATTGAAAAGCAGGCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTTGCTGGACTTCAAATTTTTTCTGTTGATAGACATGCAAGGTTTAGATATTTAAAGATGCAGACTGACAAGATCCGTAAGCGTGATGTTATCCTGAAATTCACTGGCCTGGATTCTAGCAGCTACCTTAAGACCACAGTACAAGTTAGACAAACACAGAACGATTTCCCTATTGGAACATGCATCAGTAGAACAAACATTGACAATGAAGACTTTGTTAACTTCATTGTGAAACATTTTAACTGGGCTGTGTTTGGAAATGAGCTGAAGTGGTATTGGACTGAGCCGCAACAAGGGAATTTCAATTACAAGGATGCTGATGATCTGTTAAACTTGTGTCAGAAACACAACATACAAACTCGTGGACACTGTATCTTCTGGGAAGTGGATGGAACCGTTCAGCAATGGATCAAATCACTGAACAAAAATGATTTGATGACAGCTGTCCAAAACCGCTTAACCGGCTTACTCACACGCTACAAGGGCAAGTTTAGTCACTATGATGTTAACAATGAAATGCTGCACGGTTCATTTTACCAAGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCAAACCAACTAGATCCATCTGCTACATTGTTTGTGAATGATTACCATGTTGAAGATGCATGTGACACAAGATCATGTCCTGATAAATACATTGAACATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGGGGGATTGGAATTCAAGGCCACATAGATAGTCCAGTGGGGCCTATAGTTAGTTCTTCCCTTGATAAATTGGGAATCCTTGGTCTACCTATATGGTTCACAGAACTTGATGTGTCTTCTATCAATGAATATGTGAGAGCAGATGATATGGAAGTTATGCTACGTGAAGCTTTTGCTCACCCTGCTGTTGAAGGCATAATGCTGTGGGGGTTTTGGGAATTGTTTATGAGTAGGGACAATGCACACTTGGTGAATGCAGAAGGTGACATCAATGAAGCTGGGAAAAGATTCCTAGCTCTAAAACAAGAGTGGCTATCTCATAGCCGTGGTCATGTTGATGATCAAGGTCAATTCAACTTCAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACCCCAACAAAGAAAATTTCCAAGACCTTTGTGCTTGACAAAGGTGACTCGCCACTAGTGGTGTCCATTGAATTATAA 2796 0.4263 MKRFFACCFTSRASEFHSHRKHKHSQSQIMAGNNSGPSGSKAANILLNHDFSGGLNSWHLNSCNGYVISAEAGTQGGILMESDGNYAVITDRKECWQGLEQDVTDRISIGSTYMVSACVGVSGLSQGSTDVLATLKLEYRDSATRYLFIGRTSVVKGSWERLEGTFSLSTMPDRVIFYLEGPASGIDLLIRSVEINCSSPNNNVTSTGCVSAGDDGNIIINPQFEDGLKNWSGRGCKIMLHDSMGDGKIVPKVGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVTNADVRATLWVQTPDLREQYIGIANVQATDKDWVTMQGKFLLNGSPSKVVLYLEGPPPGTDILVNTLALNHAAKTPPSTPPDVKNVAYGVNIIENSNLADGTKGWYPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRTQTWMGPAQTITEKLKLFLTYQVSAWVRIGSGSAGPQNVNVALGVDNQWVNGGQTEVSDDRWHEIGGSFRIEKQASKVMVYVQGPASGVDLMVAGLQIFSVDRHARFRYLKMQTDKIRKRDVILKFTGLDSSSYLKTTVQVRQTQNDFPIGTCISRTNIDNEDFVNFIVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLNLCQKHNIQTRGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLTGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDACDTRSCPDKYIEHILDLQEQGAPVGGIGIQGHIDSPVGPIVSSSLDKLGILGLPIWFTELDVSSINEYVRADDMEVMLREAFAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDDQGQFNFRGFHGTYNVQVVTPTKKISKTFVLDKGDSPLVVSIEL* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02094 931 SUPERFAMILY Galactose-binding domain-like 385 546 IPR008979 -
Rops9g02094 931 Gene3D - 38 197 - -
Rops9g02094 931 Gene3D - 383 544 - -
Rops9g02094 931 Gene3D - 210 368 - -
Rops9g02094 931 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 579 874 IPR001000 GO:0004553|GO:0005975
Rops9g02094 931 SMART glyco_10 625 875 IPR001000 GO:0004553|GO:0005975
Rops9g02094 931 Pfam Carbohydrate binding domain 216 353 IPR003305 GO:0016798
Rops9g02094 931 Pfam Carbohydrate binding domain 388 531 IPR003305 GO:0016798
Rops9g02094 931 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Rops9g02094 931 PANTHER GLYCOSYL HYDROLASE 373 923 IPR044846 GO:0004553|GO:0005975
Rops9g02094 931 SUPERFAMILY Galactose-binding domain-like 43 198 IPR008979 -
Rops9g02094 931 SUPERFAMILY (Trans)glycosidases 580 882 IPR017853 -
Rops9g02094 931 SUPERFAMILY Galactose-binding domain-like 216 367 IPR008979 -
Rops9g02094 931 FunFam Glycosyl hydrolase family 10 protein 212 368 - -
Rops9g02094 931 PRINTS Glycosyl hydrolase family 10 signature 770 782 IPR001000 GO:0004553|GO:0005975
Rops9g02094 931 PRINTS Glycosyl hydrolase family 10 signature 656 668 IPR001000 GO:0004553|GO:0005975
Rops9g02094 931 PRINTS Glycosyl hydrolase family 10 signature 738 749 IPR001000 GO:0004553|GO:0005975
Rops9g02094 931 Gene3D Glycosidases 578 887 - -
Rops9g02094 931 Pfam Glycosyl hydrolase family 10 588 845 IPR001000 GO:0004553|GO:0005975
Rops9g02094 931 FunFam Endo-1,4-beta-xylanase A 580 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02094 Rops-Chr9 38408310 38413700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02094 1 931 Glycoside Hydrolase AT1G58370 66.737 0.0 1327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02094 - - gmx:100816678 1709.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02094 9 38408310 38413700 Rops9g02094 9 38408310 38413700 ECH
Rops9g02094 9 38408310 38413700 Rops10g01202 10 24501459 24511277 PCT