Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01616 ATGGCTTCTTCTTCTTCTTCTCTTCCTCTTTATCACCCAACCCACTGCTTCTTCTTCAACACCCAACACTTCAAAGCTTTGCGCCATGGCTTCTTCTGTCGACCCTCACACTCATTTCCCTCTCTTTCTGAAAACAAACCACCACCTGTTAAAGCTTCCCTTGATGCTCCCCCATTCCCCTTGTTTCAGCCTCCCAAACTTGAAGAAGACTCATCATCTGAGTTGGAGCCTGTAGATCCTGATTTCTACAAGATAGGTTACATCCGAAGCATGAGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCTGATGGTTTTGGAGTGTATGCTTCCAAAGATGTAGAACCTCTTCGCCGTCCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCATTGGCCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTGGGACTTAAGGTTAGCATGCCTTCTCTTATTTGCATTTGACTGCGAAGACAACTTTTGGCAGTTTTATGGTGACTTCTTACCAAGTGCAGATGAGTGCTCTAGCTTAATGCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAATCTAGCTTCTATTATAAGAAAGCAGCAACTGCGAGCCTTAGAATTCTGGGAGAAGAACTGGCATAATGATGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATGTGGGCAGTAGGTATTGCACAATCACGATGTATTAACATGCAAATAAGAATTGGTGCACTAAATCAAGATACAAATATGCTGATTCCCTATGCTGATATGCTGAATCATTCCTTTGAGCCAAATTGTTTTTTTCATTGGCGATTTAAGGATCGGATGCTTGAGGTTCTTATAAATGCTGGACAGCGGATTAGAAAGGGAGATGAGATGACAGTTAATTATATGAGGGCGCAGAAGAATGACATGTTTATGCAAAGATATGGATTTTCATCACCTGTGAATCCTTGGGATACGATCAAATTCTCTGGCAATGCACATATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCCTGAAGAGTATTACCATAACAATCGTCTGTCAAATGATGGAGATACTTTTGTTGATGGAGCTGTCATAGCCGCAGCACGAACATTGCCAACTTGGTCAGACGGGGATGTGCCTCCAATCCCTAGTGCAGAAAGAAAGGCTGTGAAGGTGTTACAAGAAGAATGCCGACAGATACTTGCAGAATTCGCTTCAACCTCTAAGCAAGACCAGAAATTGCTAGATTCGTCACCAGAAGCTACGAGAACACTTGAAGCGGCAATAAAGTATAGATTACACCGAAAATTGTTCATTGAGAAAGTTATCCAAGCATTGGAGATCTATCAAGAGAAAATACTGTTCTGA 1464 0.4173 MASSSSSLPLYHPTHCFFFNTQHFKALRHGFFCRPSHSFPSLSENKPPPVKASLDAPPFPLFQPPKLEEDSSSELEPVDPDFYKIGYIRSMRAYGVEFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLFAFDCEDNFWQFYGDFLPSADECSSLMLATEEELLELQDPNLASIIRKQQLRALEFWEKNWHNDAPLKIKRLARDPQRFMWAVGIAQSRCINMQIRIGALNQDTNMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQRIRKGDEMTVNYMRAQKNDMFMQRYGFSSPVNPWDTIKFSGNAHIHLDSFLSIFNISGLPEEYYHNNRLSNDGDTFVDGAVIAAARTLPTWSDGDVPPIPSAERKAVKVLQEECRQILAEFASTSKQDQKLLDSSPEATRTLEAAIKYRLHRKLFIEKVIQALEIYQEKILF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01616 487 ProSiteProfiles SET domain profile. 83 328 IPR001214 GO:0005515
Rops11g01616 487 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 73 457 - -
Rops11g01616 487 SUPERFAMILY SET domain 103 343 IPR046341 -
Rops11g01616 487 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 339 480 IPR036464 -
Rops11g01616 487 CDD SET_LSMT 95 342 - -
Rops11g01616 487 Gene3D - 364 485 IPR036464 -
Rops11g01616 487 Gene3D set domain protein methyltransferase, domain 1 88 342 - -
Rops11g01616 487 Pfam SET domain 104 327 IPR001214 GO:0005515
Rops11g01616 487 FunFam Plastid transcriptionally active 14 364 484 - -
Rops11g01616 487 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 88 342 - -
Rops11g01616 487 Pfam Rubisco LSMT substrate-binding 416 468 IPR015353 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops11g01616 SET 5.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01616 11 24680889 24690276 Rops11g01616 11 24680889 24690276 ECH