Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01202 ATGCGAAATTCATCCTCACCGTGTGGAAGTTATTTTCCTACCGATAACAGTTTGGGAAGCCACTCCATCTATAACATTCTTTGGATCTCCGACCATATTCCGGTGTCTAAAACTCCAACGGTGATGTCATTGACGAAGTCAGAGTTAGGCCATAACCTGAAGGGGTTGGCTAGGTCCAAGAAATCAGTGGTGTGGAGGTCTTCTAGTTGGTTGTTGTCTTGGCTTACAAGTCTTGTGAAATTATGGAAAACTTACAGAAGATCAATGCTGGAAACCGCTCTGAGGCATGCACTTCTACTGCCCACTGTTCAGCAAAAGACAACAAACAACACAGGATGTGTTTCCACTGATGATGAAAACATTATAATAAACCCCCAGTTTGAGGATGGCCTGAATAATTGGTCAGGAAGAGGCTGCAAGATTGTATTACATGATTCCATGGGAGATGGGAAAATCCTTCCAAAGTCTGGGAAATACTTTGCAGCTGCAACAGAACGCACACAAAGCTGGAATGGAATTCAGCAGGATATTACTGCACGAGTGCAGCGCAAGCTTGCATATGAGGTTACTGCTTTAGTTCGGATATTTGGAAACGATGTCACTACTTCTGATGTACGGGCTACTTTGTGGGTTCAAAATCCAGATCTTCGAGAGCAGTATATAGGCATCGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAGATGCAGGGAAAGTTCCTTCTAAATGGTTCCCCATCAAAAGTCGTTGTTTATTTAGAAGGCCCTTCTCCAGGCATTGACATTCTTGTCAATACGTTTGTCATAAAGCATGCAGCTAAAACACCACCTTCAACTCCCCCGGATTTTGAGAATGCTCCTTTTGGTATTAACATAATTGAGAACAGTAATCTGGTTGATGGTACCAATGGATGGTTTCCCCTTGGTAATTGTACTTTGAGTGTTGGAAGTGGTTCACCACGTATCATTCCACCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCACTAAGTGGCCGCTACATCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTTTAACTTATCAAGTATCTGCTTGGGTCCGGATTGGTTCTGGATCAAATGGGCCTCAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAATGGGTCAATGGAGGACAAGTTGAGGTTGCTGATGGCAGATGGCATGAAATCGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGACTTAATGGTTGCTGGGCTTCAAATTTTTCCTGTTGATAGACAGGCAAGGTTTAAATATTTAAGGAGGCAGACAGATAAGATCCGTAAGCGTGGTGTTGTCCTGAAATTCTCTGGATTGGACTCAAGTGGGTATACCTTTGTGAAAGTTAAACAAATACAAAACGATTTCCCAATTGGATCATGCATCAATAGAACAAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTATTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAAGTTGAACTACAAGGATGCTGATGATATGTTAGACTTGTGTCAGAAGTACAACATAGACACCCGGGGTCATTGTATCTTCTGGGAAGTGGATGGCACTGTTCAGCAATGGATCAAATCACTGAACAAAAATGATTTGATGACTGCTGTTCAAAATCGCTTAACTAGTTTATTGACTCGTTACAAAGGCAAGTTCAAGCACTATGATGTTAATAATGAAATGTTGCATGGTTCATTTTATCAAGATAGACTAGGTAAGGATATCAGGGCAAACATGTTCAAGATTGCACACCAACGAGATCCATCTGCTACCCTTTTTGTGAATGATTATCATGTTGAAGATGGAGGTGACACAAGATCATCTCCAGAAAAATACATCCAACAAATTCTAGATTTGCAAGAGCAAGGTGCCTCAGTTGGGGGAATAGGAATTCAAGGTCACATAGACAGTCCTGTGGGGCCAATTGTTTGTTCTGCCCTTGATAAAATGGGTACTCTTGGTTTACCAATCTGGTTTACTGAGCTTGATGTGTCTTCCACTAATGAATATATCAGAGCTGATGATTTGGAAGTGATGCTACGTGAAGCTGTGGCACATCCTGCCATAGATGGTGTAATGCTCTGGGGATTTTGGGAATTGTTTATGAGCCGGGACAATTCACACTTAGTGAATGCAGAAGGTGAACTCAATAAAGCTGGGAAAAGATTCCTTGATCTTAAACAAGAGTGGTTATCTCACAGCCATGGTCATGTTGATGAGCAAGGGCAATTCAGTTTCAGAGGCTTCAGTGGTACATACAACGTGGAAGTTGCAACCTTAGGAAAGAAAATTTCTAAGACGTTCGTTGTTGACAAGGGTGACTCGTCTCTGGTGGTATCAATCGACTTATAA 2499 0.4194 MRNSSSPCGSYFPTDNSLGSHSIYNILWISDHIPVSKTPTVMSLTKSELGHNLKGLARSKKSVVWRSSSWLLSWLTSLVKLWKTYRRSMLETALRHALLLPTVQQKTTNNTGCVSTDDENIIINPQFEDGLNNWSGRGCKIVLHDSMGDGKILPKSGKYFAAATERTQSWNGIQQDITARVQRKLAYEVTALVRIFGNDVTTSDVRATLWVQNPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPSPGIDILVNTFVIKHAAKTPPSTPPDFENAPFGINIIENSNLVDGTNGWFPLGNCTLSVGSGSPRIIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSGSNGPQNVNVALGVDNQWVNGGQVEVADGRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMVAGLQIFPVDRQARFKYLRRQTDKIRKRGVVLKFSGLDSSGYTFVKVKQIQNDFPIGSCINRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGKLNYKDADDMLDLCQKYNIDTRGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLTSLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKIAHQRDPSATLFVNDYHVEDGGDTRSSPEKYIQQILDLQEQGASVGGIGIQGHIDSPVGPIVCSALDKMGTLGLPIWFTELDVSSTNEYIRADDLEVMLREAVAHPAIDGVMLWGFWELFMSRDNSHLVNAEGELNKAGKRFLDLKQEWLSHSHGHVDEQGQFSFRGFSGTYNVEVATLGKKISKTFVVDKGDSSLVVSIDL* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01202 832 FunFam Glycosyl hydrolase family 10 protein 287 446 - -
Rops10g01202 832 Gene3D - 114 272 - -
Rops10g01202 832 Gene3D - 288 446 - -
Rops10g01202 832 Pfam Carbohydrate binding domain 120 257 IPR003305 GO:0016798
Rops10g01202 832 Pfam Carbohydrate binding domain 291 434 IPR003305 GO:0016798
Rops10g01202 832 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 703 713 IPR031158 -
Rops10g01202 832 SUPERFAMILY (Trans)glycosidases 484 783 IPR017853 -
Rops10g01202 832 Gene3D Glycosidases 478 788 - -
Rops10g01202 832 SUPERFAMILY Galactose-binding domain-like 289 449 IPR008979 -
Rops10g01202 832 FunFam Endo-1,4-beta-xylanase A 481 783 - -
Rops10g01202 832 PANTHER GLYCOSYL HYDROLASE 284 824 IPR044846 GO:0004553|GO:0005975
Rops10g01202 832 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 480 775 IPR001000 GO:0004553|GO:0005975
Rops10g01202 832 Pfam Glycosyl hydrolase family 10 488 746 IPR001000 GO:0004553|GO:0005975
Rops10g01202 832 FunFam Glycosyl hydrolase family 10 protein 115 271 - -
Rops10g01202 832 Coils Coil 758 778 - -
Rops10g01202 832 SMART glyco_10 526 776 IPR001000 GO:0004553|GO:0005975
Rops10g01202 832 SUPERFAMILY Galactose-binding domain-like 118 272 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01202 Rops-Chr10 24501459 24511277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01202 102 832 Glycoside Hydrolase AT1G58370 73.605 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01202 - - gmx:100784250 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01202 10 24501459 24511277 Rops10g01202 10 24501459 24511277 ECH
Rops9g02094 9 38408310 38413700 Rops10g01202 10 24501459 24511277 PCT