Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01192 ATGGTGGACCCTTACGCGCTTGGATGGATCGTATGCTCCATCCTCAGCCTCTTTGCGCTCTACAATTTGGTTTTTGTTAGAAAGAATCGCAGCGTTTCACCAGAGGTCGCGACGGAGAACGTAACAACCACCGCCGGAGATTGCAGATCCTTGAACCGCAACGGCGACATTGACGTCATCATTGTCGGAGCCGGTGTCGCCGGCTCCGCTCTCGCTCACACTCTTGGCAAGGATGGACGTCGATTACTTGTCATTGAAAGAGATTTGAATGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGGGGCTATCTCAAATTAATTGAGCTGGGGCTTGAAGATTGTGTGGAGGAAATTGATGCTCAGCAAGTCTATGGTTATGCTCTTTTCAAGGATGGGAAACACACACGACTTTCTTATCCCTTGGAAAAGTTTCACTCGGATATTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTCCCAATGTGCGATTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAGAAAGGGACAATTAAAGGTGTGCAGTACAAAACGAAAGATGGTCAGGAATTATCAGCATGCGCACCTCTAACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGCTCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTTGTTTTGTTGGCTTAGTTTTGGAGAACTGTGAACTTCCATGTGCAAATCATGGTCATGTCATACTAGGAGATCCTTCACCGGTTCTGTTCTATCCTATTAGTAGTACAGAAGTTCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCCAATGGTGAAATGGCAAAATATTTGAAGACAGTGGTAGCTCCCCAGGTTCCCCCTGAGCTTTATGATGCTTTCGTAGCTGCAGTGGACAAAGGCAACATGAGGACGATGCCAAACAGAAGCATGCCAGCAGCTCCTTATCCTACTCCCGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACGGGGGGTGGAATGACTGTGGCTTTATCTGATATAGTAGTGCTGCGAAATCTTCTGAAGCCTTTGCGTGACCTGAATGACGCATCCAAACTATGCAAATACCTTGAATCCTTTTATACCTTGCGCAAGCCTGTGGCATCCACCATAAACACGTTGGCAGGAGCCCTTTACAAGGTTTTTTGCGCATCACCTGATCCGGCAAGGAAGGAAATGCGACAAGCTTGTTTCGATTATCTGAGTCTTGGAGGTCTATTCTCGGAAGGACCAATCTCTTTGCTTTCAGGATTAAACCCTCGGCCATTGAGCCTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTCTACTGCTACCATTTCCTTCCCCTAAACGCATATGGACTGGAGTCCGATTAATAACTAGTGCGTCTGGAATCATCTTACCCATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACTGTTCCAGCTTATTACAGAACTCCCCCGGATGCGGATGCATAG 1572 0.4714 MVDPYALGWIVCSILSLFALYNLVFVRKNRSVSPEVATENVTTTAGDCRSLNRNGDIDVIIVGAGVAGSALAHTLGKDGRRLLVIERDLNEPDRIVGELLQPGGYLKLIELGLEDCVEEIDAQQVYGYALFKDGKHTRLSYPLEKFHSDIAGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKDGQELSACAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEVRCLVDVPGQKVPSISNGEMAKYLKTVVAPQVPPELYDAFVAAVDKGNMRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDASKLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWTGVRLITSASGIILPIIKAEGVRQMFFPATVPAYYRTPPDADA* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01192 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 58 80 - -
Rops10g01192 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 335 350 - -
Rops10g01192 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 207 222 - -
Rops10g01192 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 350 366 - -
Rops10g01192 523 FunFam Squalene monooxygenase 2 51 431 - -
Rops10g01192 523 Gene3D - 50 431 IPR036188 -
Rops10g01192 523 SUPERFAMILY FAD/NAD(P)-binding domain 57 432 IPR036188 -
Rops10g01192 523 Pfam Squalene epoxidase 208 480 IPR013698 GO:0004506|GO:0016020|GO:0050660
Rops10g01192 523 PANTHER SQUALENE MONOOXYGENASE 20 519 IPR040125 GO:0004506|GO:0016126
Rops10g01192 523 Pfam NAD(P)-binding Rossmann-like domain 61 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01192 Rops-Chr10 24297388 24301591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01192 39 519 Miscellaneous Gene Families AT1G58440 80.124 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01192 K00511 - gmx:100820031 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01192 10 24297388 24301591 Rops10g01192 10 24297388 24301591 ECH
Rops9g02103 9 38631322 38635210 Rops10g01192 10 24297388 24301591 PCT