LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01188	ATGAAGTCCATGAATGACAGTAACACAGATGATAGAAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCTCACATGAAAATGGAGGTTAATTCTGGTCCTCAACATCATCATCACTACCATCATCAACCAGCTCAGGCTTCTGCGGCTACTACTACTACTGTCTCTAACACTGTTCCGACAACCTTCTATTTGTCCCCTTCTCACATAGGTAACTCCGGAATGTGTTATGGTGTTGGGGAAACTGGAAACTTCCATTCTCCTTTGACTGTAATGCCTCTCAAGTCCGATGGGTCACTTTGTATCATGGAAGCTCTTAGTAGATCACAAACCCAAGTGATGGTGCCTACTTCATCTCCCAAACTGGAGGACTTTCTAGGTGGTGCAACTATGGGAACTCACGAAAGAGAGGCGATGGCTCTTAGCTTAGACAGCATCTATTACAATAGCCAAAATGCAGCTAACAGAGACCATTCACTGGACCTTCTTTCAGAACCCTTCAGGCAACAAGGAAATATAACTGTCCAATCACATCCATATTATTCAGGACTTGCTTGCAATGGGATATATCAAGCACCATTAGAGGAAGAAAACAAGGAAACTCACGTTACAGTTTGCAGCTCCGAAATGCCTCAAATGGCAGAAGAAGTCTTGAAAAACTGGGTGCCCCCAAGGGAGTATTCTGCTCAGCAGGGTCTGGAGCAGCAAATGAACTGTAGCAGCATGGGCAATGATCGTGGAAATGCTGCGTCTCTTGGTACAGCAGGTTGTGGAGAGTTACAGTCTCTAACCTTATCTATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACGGCTCCTAGGCAGATCTCACCTTCTGGAACGGATTCAGTGGCTATGGATGCCAAAAAGAGAGGAGCTGCTAAGCTTGGACAGAAGCAACCAGTGCATAGGAAATCTATTGACACATTTGGGCAGAGAACATCGCAGTATAGAGGCGTGACAAGGCACAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAGACCAGGAAAGGAAGACAAGTATATTTGGGGGGTTATGATATGGAAGAGAAAGCAGCAAGAGCCTATGATCTTGCAGCCCTTAAGTACTGGGGACCTTCTACTCATATTAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGACCAGGCAGGAATATGTGGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCGTCAATGTACAGAGGGGTGACGAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATAAAATTCCGTGGAGTAAATGCAGTCACAAATTTTGACATATCAAGATACGATGTTGAAAGGATCATGGCCAGCAATACTCTTCTTGCTGGGGAGCTGGCAAGGAGAAACAAAGATAATGATCCAAGAACCGAGGCCATTGAGTACAATGGTGTATCAAGTCAGAGCAATGGGGAAGCAGTTCAAGCTCGAAACAACAGCAATGAAAATGATTCAGACTGGAAGATGGTTTTGTATCATAATCCACAGCAACAGTCTAATAATAGCTGTGACCAAAAAATCATGAACTGTGGAAATTATAGAAACACTGCTGCTTTCTCTGTGGCCCTACAAGATCTCATTGGGATTGACTCAGTAGGTACTGGCCAGCCCATGCTGGATGACTCTAGCAAAGTTGGGACTCATTTTTCAAACCCGTCGTCTCTTGTGACCAGTCTTAGTAGCTCAAGAGAAGCCAGCCCTGATAAAACGGGTCCTTCACTTCTCTTTCCAAAGGCCCCAATGGAAACAAAGATTGTCAACCCTATTGCCACTGGTGTTAGTTCTTGGTTTCCATCACCACCACCAGCTCAAATAAGGCCATCTGCAGCTATAGCTTTGTCTCATTTGCCAGTTTTTGCTGCTTGGAATGATACTTAG	2046	0.4501	MKSMNDSNTDDRNNHNWLGFSLSPHMKMEVNSGPQHHHHYHHQPAQASAATTTTVSNTVPTTFYLSPSHIGNSGMCYGVGETGNFHSPLTVMPLKSDGSLCIMEALSRSQTQVMVPTSSPKLEDFLGGATMGTHEREAMALSLDSIYYNSQNAANRDHSLDLLSEPFRQQGNITVQSHPYYSGLACNGIYQAPLEEENKETHVTVCSSEMPQMAEEVLKNWVPPREYSAQQGLEQQMNCSSMGNDRGNAASLGTAGCGELQSLTLSMSPGSQSSCVTAPRQISPSGTDSVAMDAKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDNDPRTEAIEYNGVSSQSNGEAVQARNNSNENDSDWKMVLYHNPQQQSNNSCDQKIMNCGNYRNTAAFSVALQDLIGIDSVGTGQPMLDDSSKVGTHFSNPSSLVTSLSSSREASPDKTGPSLLFPKAPMETKIVNPIATGVSSWFPSPPPAQIRPSAAIALSHLPVFAAWNDT*	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01188	681	PRINTS	Ethylene responsive element binding protein signature	323	334	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	PRINTS	Ethylene responsive element binding protein signature	464	484	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	FunFam	AP2-like ethylene-responsive transcription factor	423	484	-	-
	Rops10g01188	681	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	115	555	-	-
	Rops10g01188	681	ProSiteProfiles	AP2/ERF domain profile.	424	482	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	FunFam	AP2-like ethylene-responsive transcription factor ANT	321	390	-	-
	Rops10g01188	681	SUPERFAMILY	DNA-binding domain	321	390	IPR016177	GO:0003677
	Rops10g01188	681	MobiDBLite	consensus disorder prediction	606	624	-	-
	Rops10g01188	681	SMART	rav1_2	322	394	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	SMART	rav1_2	424	488	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	CDD	AP2	423	484	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	MobiDBLite	consensus disorder prediction	606	632	-	-
	Rops10g01188	681	Gene3D	AP2/ERF domain	321	390	IPR036955	GO:0003700\|GO:0006355
	Rops10g01188	681	Gene3D	AP2/ERF domain	424	484	IPR036955	GO:0003700\|GO:0006355
	Rops10g01188	681	CDD	AP2	321	388	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	Pfam	AP2 domain	322	380	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	Pfam	AP2 domain	425	474	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	ProSiteProfiles	AP2/ERF domain profile.	322	388	IPR001471	GO:0003700\|GO:0006355
	Rops10g01188	681	SUPERFAMILY	DNA-binding domain	423	484	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g01188	Rops-Chr10	24226786	24231050	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g01188	405	681	AP2-EREBP Transcription Factor Family	AT4G37750	25.839	1.91e-13	71.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Rops10g01188		AP2	1.6e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g01188	K09285		-	gmx:100787223	1019.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops10g01188	10	24226786	24231050	Rops10g01188	10	24226786	24231050	ECH
	Rops9g02109	9	38832700	38836906	Rops10g01188	10	24226786	24231050	PCT