Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2517 ATGGCTTCTTTTCCTCTTTACCAGCCAACCCACTCCATTTTCTCCAATACCCAGGTCAAGGGCTTGCACTTGCACGGTGGCTTTTTCTGGCGACCCACTTACTCCTTTGGGACTCTTGCTGAAAACAAAGCACGACCCATCAAAGCTTTGGTTGCTAAATCCTCATTTCCCCTGTTTCAGCCTCCCCAAGTTGAAGAAGAGTTACCGTCTGAGTTGGAGCCTGTGGATCCTGACTTCTATAAGATTGGGTATGTCCGAAGCATGCGAGCTTATGGAGTTCAATTTAAAGAAGGGCCAGATGGTTTGGGTGTATATGCTTCCAAAGATGTAGAACCTCTTCGTCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCGAATATAATTCCCTTGGATCATCCAATATTTGATATTATTAATTCGACAAATCCAGAGACAGATTGGGACTTAAGGTTAGCATGCCTTCTCTTATTCGCATTTGACTGTGAAGGCAACTTCTGGCAATTGTATAGCGACTTCTTACCGAGTGCAGATGAGTGCACTAGCCTACTTCTGGCTTCAGAGGAAGAACTTTTGGAGCTACAGGATCCCAATCTTGCTTCCACTATTAGAAAACAGCAACAGCGAGCCTTAGAATTCTGGCAAAATAATTGGCACAGTGATGCACCTCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTAAGTATTGCACAGTCACGATGTATTAACATGCAAACGAGAATTGGTGCTCTAACTCAAGACGCAAACATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTATTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTCATAAATGCTGGACACCGCGTTAGAAAGGGAGATGAGATGACAGTTAATTACATGAGCTCGCAGAAGAACGATACATACATGCAAAGATATGGATTTTCATCACCTGTGAATCCATGGGATGAGGTACAATTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCGTGAAGAGTATTACCATAACAATGGTCTATCAAAGGCTGGCGATACTTTTGTTGATGGAGCAGTCATAGCTGCGGCACGAACATTGCCAAGTTGGTCAGATGGGGATGTGCCTCCAATCCCTAGCGTGGAAAGAGAGGCTGTGAAGGAGTTGCAAAATGAATGCCAAAAGATGCTCGCAGGATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTGGATTCCATGACAGATGCCACGAGGACACTTGAAGCTGCAATTAAGTATAGATTGCACAGAAAATTGTTGATGCAGAAAGTTAGCAAAGCATTAGAGATGTACCAAGAGAAGATACTGTTCTGA 1455 0.4302 MASFPLYQPTHSIFSNTQVKGLHLHGGFFWRPTYSFGTLAENKARPIKALVAKSSFPLFQPPQVEEELPSELEPVDPDFYKIGYVRSMRAYGVQFKEGPDGLGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPNIIPLDHPIFDIINSTNPETDWDLRLACLLLFAFDCEGNFWQLYSDFLPSADECTSLLLASEEELLELQDPNLASTIRKQQQRALEFWQNNWHSDAPLKIKRLARDPQRFIWAVSIAQSRCINMQTRIGALTQDANMLIPYADMLNHSFEPNCYFHWRFKDRMLEVLINAGHRVRKGDEMTVNYMSSQKNDTYMQRYGFSSPVNPWDEVQFSGNARIHLDSFLSIFNISGLREEYYHNNGLSKAGDTFVDGAVIAAARTLPSWSDGDVPPIPSVEREAVKELQNECQKMLAGFATTSKQDQKLLDSMTDATRTLEAAIKYRLHRKLLMQKVSKALEMYQEKILF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2517 484 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 52 476 - -
Pvu9g2517 484 Gene3D - 367 482 IPR036464 -
Pvu9g2517 484 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 52 476 - -
Pvu9g2517 484 Gene3D set domain protein methyltransferase, domain 1 85 339 - -
Pvu9g2517 484 CDD SET_LSMT 92 339 - -
Pvu9g2517 484 Pfam Rubisco LSMT substrate-binding 414 465 IPR015353 -
Pvu9g2517 484 Pfam SET domain 101 324 IPR001214 GO:0005515
Pvu9g2517 484 SUPERFAMILY SET domain 100 340 IPR046341 -
Pvu9g2517 484 ProSiteProfiles SET domain profile. 80 325 IPR001214 GO:0005515
Pvu9g2517 484 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 336 478 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu9g2517 SET 1.4e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2517 9 35673615 35682458 Pvu9g2517 9 35673615 35682458 ECH