LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0775	ATGGAAAACTTACCGAAGATCAATGAAGGAAACCACTCTGAGAAGATAATAAACAAGGGGTGCGAGTCCACCGAAGATGAAGACATCATAATAAATCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCCTTACATGACTCCATGGAAGATGGGAAAATTCTTCCGAAGTCTGGTAAATTCTTTGCATCTGCAACAGATCGTACCCAAAGCTGGAACGGGATTCAGCAGGAGATTACTGGAAGAGTGCAGCGCAAGCTTGCCTACGAGGTTACTGTATTAGTTCGGATATTTGGGAACAATGTCACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAATTCCTTCTAAATGGTTCCCCATCAAAAGTAGTAGTTTATTTAGAAGGCCCCCCTCCAGGCACTGACATTCTTGTCAATACTTTGGTTATAAAACATGCAGCTAAAACACCACCTTCAACACCACCAGATTGTGAGATTGCTGCTTTTGGTGTTAACATAATTGAAAACAGTAATCTGGGCAATGGAACCAATGGATGGTTTCCACTTGGTAATTGTACTTTGAGCGTTCAGAGTGGTTCACCGCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCCTTGAGTGGGCGCTACCTCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGATAAATTTAAACTCTTTCTAACTTATCAAGTATCTGCTTGGGTCAGGATCGGTTCCGGATCAACTGGGCCTCAGAATGTTAATGTTGCTCTTAGTGTTGATAACCAGTGGGTCAATGGGGGACAAGTTGAGATTGCTGATGGCAGGTGGCACGAAATTTGTGGGTCTTTTAGAATTGAAAAGCAGGCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATTTAATGATTGCTGGACTTCAAATTTTTGCTGTTGACAGACAAGCGAGGTTTAAATATTTGAGGAGGCAGACAGACAAGATCCGTAAGCGTGATATTACCCTAAAATTCTCTGGCTTGGATTCAATTGGAAATCTTGGAACCTTGGTGAGAGTTAGACAAATACAAAATGATTTTCCCATAGGAACGTGCATCAGTAGAAGCAATATTGACAATGAAGATTTTGTAGACTTCTTTGTGAAACATTTTAACTGGGCCGTTTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCTGATGAAATGCTAGACTTATGTCAGAAAAACAAGATAGACACTCGGGGCCATTGTATCTTCTGGGAAGTGGACGGCAATGTTCAGCAATGGATTAAATCACTAAATAAAACTGATTTGATGAAAGCTGTCCAAAACCGCCTGAATGACTTGTTGACTCGCTACAAGGGTAAGTTCAGACACTATGATGTCAACAACGAAATGTTGCATGGTTCGTTTTATCAGGATAGACTGGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCACACCAACTAGATCCATCTGCTACTCTTTTTGTGAATGACTACCATGTTGAAGATGGATGTGACACCAGATCATCCCCAGAAAAGTACATTCAACATATTCTTGATTTGCAGCAGCAAGGTGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAATTGGGCACTCTTGGTATACCAATATGGTTTACTGAGCTTGATGTGTCATCCACCAATGAATATGTCAGAGCTGATGATCTAGAAGTTATGCTGCGGGAAACTATGGCACACCCAGCAATAGATGGTGTAATGCTCTGGGGATTTTGGGAGTTGTTTATGAGCCGGGAAAATTCACACCTGGTGGATGCAGAAGGGGAACTCAATGAAGCTGGGAAAAGATTCCTTGCTCTCAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGCTGATGCGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAAGGTGGAAGTTGTGACCTTAGCAGAGAAAGTTTCCAAGACATTCGTTGTTGACAAGGGTGACTCCTCACTGGTGGTATCAATCGATTTATAA	2229	0.4271	MENLPKINEGNHSEKIINKGCESTEDEDIIINPQFDDGLNNWSGRGCKIALHDSMEDGKILPKSGKFFASATDRTQSWNGIQQEITGRVQRKLAYEVTVLVRIFGNNVTTSDVRATLWVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPPGTDILVNTLVIKHAAKTPPSTPPDCEIAAFGVNIIENSNLGNGTNGWFPLGNCTLSVQSGSPRIIPPMARDSLGPHESLSGRYLLVTNRTQTWMGPAQMITDKFKLFLTYQVSAWVRIGSGSTGPQNVNVALSVDNQWVNGGQVEIADGRWHEICGSFRIEKQASKVMVYIQGPASGVDLMIAGLQIFAVDRQARFKYLRRQTDKIRKRDITLKFSGLDSIGNLGTLVRVRQIQNDFPIGTCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWEVDGNVQQWIKSLNKTDLMKAVQNRLNDLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQLDPSATLFVNDYHVEDGCDTRSSPEKYIQHILDLQQQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGIPIWFTELDVSSTNEYVRADDLEVMLRETMAHPAIDGVMLWGFWELFMSRENSHLVDAEGELNEAGKRFLALKQEWLSHSHGYADAQGQFSFRGFSGTYKVEVVTLAEKVSKTFVVDKGDSSLVVSIDL*	743

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g0775	742	PANTHER	ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN	16	742	-	-
	Pvu9g0775	742	SUPERFAMILY	Galactose-binding domain-like	26	180	IPR008979	-
	Pvu9g0775	742	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	390	685	IPR001000	GO:0004553\|GO:0005975
	Pvu9g0775	742	Gene3D	-	21	180	-	-
	Pvu9g0775	742	Gene3D	-	193	355	-	-
	Pvu9g0775	742	Coils	Coil	668	688	-	-
	Pvu9g0775	742	Pfam	Glycosyl hydrolase family 10	399	656	IPR001000	GO:0004553\|GO:0005975
	Pvu9g0775	742	Gene3D	Glycosidases	390	697	-	-
	Pvu9g0775	742	ProSitePatterns	Glycosyl hydrolases family 10 (GH10) active site.	613	623	IPR031158	-
	Pvu9g0775	742	Pfam	Carbohydrate binding domain	199	342	IPR003305	GO:0016798
	Pvu9g0775	742	Pfam	Carbohydrate binding domain	28	164	IPR003305	GO:0016798
	Pvu9g0775	742	PANTHER	GLYCOSYL HYDROLASE	16	742	IPR044846	GO:0004553\|GO:0005975
	Pvu9g0775	742	PRINTS	Glycosyl hydrolase family 10 signature	467	479	IPR001000	GO:0004553\|GO:0005975
	Pvu9g0775	742	PRINTS	Glycosyl hydrolase family 10 signature	549	560	IPR001000	GO:0004553\|GO:0005975
	Pvu9g0775	742	PRINTS	Glycosyl hydrolase family 10 signature	581	593	IPR001000	GO:0004553\|GO:0005975
	Pvu9g0775	742	SUPERFAMILY	Galactose-binding domain-like	197	357	IPR008979	-
	Pvu9g0775	742	SMART	glyco_10	436	686	IPR001000	GO:0004553\|GO:0005975
	Pvu9g0775	742	SUPERFAMILY	(Trans)glycosidases	393	693	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0775	Pvu-Chr9	12467267	12471784	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g0775	23	742	Glycoside Hydrolase	AT1G58370	74.515	0.0	1155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0775	-		-	vun:114163722	1426.77

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g0775	9	12467267	12471784	Pvu9g0775	9	12467267	12471784	ECH
	Pvu1g0328	1	3121181	3127238	Pvu9g0775	9	12467267	12471784	PCT