Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0330 ATGTTGAATCGTGTGAGGAATAATAATAATAGCTGCTCATGGCTGTTGTTTGTAGTGAGGCACTACTCTAGAATTCAACCCCCAAGACCTGTTTCTGTTGAACCAGTAATCAGAGTATCTAACAATGTTGCTCGCCTGGATGCTCCTAAAGAAGGTCCAAAACCCAGACAACTGTTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGCCAAGAGCTCAACTAGTGATCCTGGACAGCGTGATTATGTTACTGCTGTGAATTGGATTAAGTATTACTTCAAGGGTGCATGGGGTTCTGTCATTGAATCCCATTTCAGAGAGGGTCTTGTGCAAATGGAGGACGAAGTTACTGCTGACTCTTACACTCAGAAAGAAAATCTGATGAAACCTATGCGAAAGATTAGACCTAATGAAGTGATGAAACATGGTGCCAGAGTTCACGTTCCTGTATCAATTGCTGAGACTAGGGTTTCCAAAAGATACGATGCTATTCCTTGTGGAACACTATATCCAAATGCTGATGAAATTAAGTATCTGCAAAGGCTTGTGATTTACAAGGACTCAGCTATTATTGTGCTTAATAAACCTCCAAAGTTGCCGGTTAAGGGGAATTTACCAGTTCATAATAGCATGGATGCATTGGCAGCTGCTGCACTGTCCTATGATTATGATGAGGGCCCTAAACTAGTTCACCGTCTTGACAGAGAGACCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGCATCTCATCTCCAATGGTTGTTCACTAACATTAACAATGCCAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGCTACGTATCAGAGGTATTGGGCATTGGTCATAGGGACTCCCAAGGAGAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTGCTTCTAAATGATGGGAAGACTGAGAGGATAATACTAGCTAATCATTCGAGTGTAGAACCACGCCAAGAGGCTGTAACCGAATTTCGGGTGCTTGGTCCGAAGATAAATGGATGCTCATGGGTTGAGTTACGTCCACTTACTTACAGAAAACATCAGTTGCGCGTTCATTGCGCTGAAGCACTTGGCACACCAATAGTGGGTGACTACAAGTATGGCTGGTTTGTGCACAGTCGATGGAAGCAAATGCCACGAATCGATATCGAGCCAACCACTGGAAAACCATACAAGTTGCGTAGGCCAGAAGGCCTAGATGTTCAGAAGGGAAGTGTTTTATCGAAGGTTCCCTTATTGCATCTTCACTGCAGAGAACTTGTGCTCCCCAACATTGCTAAGTTTCTACATGTTTTGAACAATAGTTCAGAAGAACTACACAGTTCACTTAACCAGCAGCCTGAAGTTCTACGATTTGTGGCAACAATGCCATCCCATATGAGAATTAGTTGGAATCTTATGTCATCGTATTTAGTCTGA 1443 0.431 MLNRVRNNNNSCSWLLFVVRHYSRIQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSTSDPGQRDYVTAVNWIKYYFKGAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPMRKIRPNEVMKHGARVHVPVSIAETRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLFTNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILANHSSVEPRQEAVTEFRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLNNSSEELHSSLNQQPEVLRFVATMPSHMRISWNLMSSYLV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0330 480 SUPERFAMILY Pseudouridine synthase 176 433 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu1g0330 480 Pfam RNA pseudouridylate synthase 191 362 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu1g0330 480 MobiDBLite consensus disorder prediction 46 79 - -
Pvu1g0330 480 Gene3D Pseudouridine synthase 175 438 - -
Pvu1g0330 480 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 13 477 - -
Pvu1g0330 480 CDD PseudoU_synth_RluA_like 191 387 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu1g0330 480 ProSitePatterns Rlu family of pseudouridine synthase signature. 231 245 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu1g0330 480 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 13 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0330 Pvu-Chr1 3135054 3142952 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0330 - - pvu:PHAVU_001G032500g 964.526